YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|19921886, gi\|...
Organism:	Drosophila melanogaster
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19921886, gi|....

Description	E-value	Query Range	Subject Range
gi\|45521112, gi\|... - gi\|91775683\|ref\|YP_545439.1\| primary replicative DNA helicase [Methylobacillus flagellatus KT], gi\|9...	192.0	[0..1]	[183..190]
gi\|92113020, gi\|... - gi\|92113020\|ref\|YP_572948.1\| replicative DNA helicase [Chromohalobacter salexigens DSM 3043], gi\|917...	188.0	[0..1]	[183..192]
gi\|53753553, gi\|... - gi\|54293721\|ref\|YP_126136.1\| replicative DNA helicase [Legionella pneumophila str. Lens], gi\|5375355...	187.0	[0..1]	[183..192]
gi\|11352476, gi\|... - gi\|12642368\|gb\|AAK00230.1\|AF229443_1 replicative DNA helicase DnaB [Pseudomonas aeruginosa], pir\|\|E8... gi\|9951210, gi\|1... - gi\|9951210\|gb\|AAG08316.1\|AE004906_4 replicative DNA helicase [Pseudomonas aeruginosa PAO1], gi\|15600...	187.0	[0..1]	[183..195]
gi\|53750549, gi\|... - gi\|54296764\|ref\|YP_123133.1\| replicative DNA helicase [Legionella pneumophila str. Paris], gi\|537505... gi\|52628086, gi\|... - gi\|52840975\|ref\|YP_094774.1\| replicative DNA helicase [Legionella pneumophila subsp. pneumophila str... gi\|148282382, gi... - gi\|148360609\|ref\|YP_001251816.1\| replicative DNA helicase [Legionella pneumophila str. Corby], gi\|14...	187.0	[0..1]	[183..192]
gi\|107104030 - gi\|107104030\|ref\|ZP_01367948.1\| hypothetical protein PaerPA_01005103 [Pseudomonas aeruginosa PACS2] gi\|94417542, gi\|... - gi\|94417542\|ref\|ZP_01297360.1\| hypothetical protein PaerP_01000859 [Pseudomonas aeruginosa PA7], gi\|... gi\|218894026, gi... - gi\|218894026\|ref\|YP_002442895.1\| replicative DNA helicase [Pseudomonas aeruginosa LESB58], gi\|218774...	187.0	[0..1]	[183..195]
gi\|53726506, gi\|... - gi\|53726506\|ref\|ZP_00141405.2\| COG0305: Replicative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14]...	187.0	[0..1]	[183..195]
gi\|229534015, gi... - gi\|229534015\|ref\|ZP_04423381.1\| primary replicative DNA helicase [Rhodothermus marinus DSM 4252], gi... gi\|2661771 - gi\|2661771\|emb\|CAA74140.1\| helicase [Rhodothermus marinus]	186.0	[0..1]	[183..220]
gi\|21218457, gi\|... - gi\|21218457\|ref\|NP_631985.1\| replicative DNA helicase [Pseudomonas sp. SLT2001], gi\|17426815\|emb\|CAD...	186.0	[0..1]	[183..195]
gi\|25299879 - pir\|\|H97355 replicative DNA helicase, DNAC [imported] - Clostridium acetobutylicum gi\|15896946, gi\|... - gi\|15896946\|ref\|NP_350295.1\| replicative DNA helicase [Clostridium acetobutylicum ATCC 824], gi\|1502...	185.0	[0..1]	[178..181]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALRTSITI QESKKQPFKP GRVWELCGQP GVGKTQLLYT LALNFVWKHS QAVLFIDTKR  60
   61 EFSCKRIQDM LRAREVDEEA SERAMKGIRV VQAATGADIN DLLKSFDHQL TAETHASMQT 120
  121 KLVLIDSLAA CFAFYRGRRM RDVRKSVLTE LACKIRKLAL RGVAFVIGNI VVVMMESKMA 180
  181 TMRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	2q6tA
Description:	No description for 2q6tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits