YRC Public Data Repository - Protein Structure Prediction

Protein:	Dbp45A-PA
Organism:	Drosophila melanogaster
Length:	521 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dbp45A-PA.

Description	E-value	Query Range	Subject Range
gi\|51594838, gi\|... - gi\|51594838\|ref\|YP_069029.1\| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP 32953],... gi\|25511152 - pir\|\|AI0423 cold-shock dead-box protein A [imported] - Yersinia pestis (strain CO92) gi\|115349113, gi... - gi\|218930502\|ref\|YP_002348377.1\| ATP-dependent RNA helicase DeaD [Yersinia pestis CO92], gi\|16123634... gi\|108808981, gi... - gi\|108808981\|ref\|YP_652897.1\| ATP-dependent RNA helicase DeaD [Yersinia pestis Antiqua], gi\|10878089... gi\|166010049, gi... - gi\|166010049\|ref\|ZP_02230947.1\| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis bi... gi\|108774412, gi... - gi\|229900962\|ref\|ZP_04516086.1\| ATP-dependent RNA helicase [Yersinia pestis Nepal516], gi\|229682301\|... gi\|165922308, gi... - gi\|165925696\|ref\|ZP_02221528.1\| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis bi... gi\|167398750, gi... - gi\|167398750\|ref\|ZP_02304274.1\| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis bi... gi\|166204501, gi... - gi\|166214269\|ref\|ZP_02240304.1\| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis bi... gi\|167057246, gi... - gi\|167423076\|ref\|ZP_02314829.1\| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis bi... gi\|167420623, gi... - gi\|167420623\|ref\|ZP_02312376.1\| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis bi... gi\|229839140, gi... - gi\|229839140\|ref\|ZP_04459299.1\| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. P... gi\|89105037, gi\|... - gi\|89105037\|ref\|ZP_01177564.1\| COG0513: Superfamily II DNA and RNA helicases [Yersinia pestis biovar... gi\|186893847, gi... - gi\|186893847\|ref\|YP_001870959.1\| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis PB1/+]... gi\|229896629, gi... - gi\|229896629\|ref\|ZP_04511796.1\| ATP-dependent RNA helicase [Yersinia pestis Pestoides A], gi\|2297004... gi\|229899704, gi... - gi\|229899704\|ref\|ZP_04514845.1\| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. I... gi\|77634866, gi\|... - gi\|77634866\|ref\|ZP_00796958.1\| COG0513: Superfamily II DNA and RNA helicases [Yersinia pestis Angola... gi\|152959087, gi... - gi\|77631483\|ref\|ZP_00794069.1\| COG0513: Superfamily II DNA and RNA helicases [Yersinia pseudotubercu... gi\|149289109, gi... - gi\|153997472\|ref\|ZP_02022572.1\| cold-shock dead-box protein A [Yersinia pestis CA88-4125], gi\|149289... gi\|145600551, gi... - gi\|145600551\|ref\|YP_001164627.1\| ATP-dependent RNA helicase DeaD [Yersinia pestis Pestoides F], gi\|1... gi\|161511438 - gi\|161511438\|ref\|NP_991988.2\| ATP-dependent RNA helicase DeaD [Yersinia pestis biovar Microtus str. ... gi\|161484874 - gi\|161484874\|ref\|NP_668033.2\| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM] Q66F54\|Q66F54_YERPS - Cold-shock dead-box protein A - Yersinia pseudotuberculosis	383.0	[0..1]	[521..1]

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Predicted Domain #1

Region A:
Residues: [1-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRKEANPFQ ILGLRPWLVK QLTKLGLKGA TPIQQKCIPA ILAGQDCIGA AKTGSGKTFA  60
   61 FALPILERLS EEPVSHFALV LTPTHELAYQ ISEQFLVAGQ AMGVRVCVVS GGTDQMVESQ 120
  121 KLMQRPHIVV AMPGRLADHL TGCDTFSFDN LKYLVVDEAD RMLNGDFDES LSIIERCLPK 180
  181 TRQNLFFSAT MKDFIKESSI FPIASDCFEW SQDSDVATVE TLDQRYLLCA DYDRDMVLIE 240
  241 ALRKYREENE NANVMIFTNT KKYCQLLSMT LKNMEIDNVC LHGFMRQKER VAALSRFKSN 300
  301 QIRTLIATDV AARGLDIPSV ELVMNHMLPR TPKEYIHRVG RTARAGRKGM SISIFRFPRD 360
  361 LELLAAIEEE INTKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.30103
Match:	2hxyA
Description:	No description for 2hxyA was found.

Predicted Domain #2

Region A:
Residues: [376-521]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEHPIDQRMV ERIFMQVNVT RRESEMQLDN NDFDERAQNY RRKTWIMEGK DPDQMEALYR  60
   61 KKQKDKLREI RRKRKLQHAE PAASEEGKAL LQDERFKSVD SARFEKKGKG RSRATQEDTP 120
  121 TKPLKRLNKE KPVAQKGRAD VKKDKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.522879
Match:	1d9zA
Description:	Nucleotide excision repair enzyme UvrB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits