YRC Public Data Repository - Protein Structure Prediction

Protein:	MrgBP-PA
Organism:	Drosophila melanogaster
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MrgBP-PA.

Description	E-value	Query Range	Subject Range
gi\|109469357, gi... - gi\|109471518\|ref\|XP_001059141.1\| PREDICTED: similar to MRG-binding protein [Rattus norvegicus], gi\|1...	245.0	[0..7]	[200..87]
gi\|149034016 - gi\|149034016\|gb\|EDL88799.1\| rCG38412, isoform CRA_a [Rattus norvegicus] MRGBP_MOUSE - MRG/MORF4L-binding protein OS=Mus musculus GN=Mrgbp PE=1 SV=2	244.0	[0..7]	[200..13]
gi\|208966030 - gi\|208966030\|dbj\|BAG73029.1\| chromosome 20 open reading frame 20 [synthetic construct] C20orf20 - chromosome 20 open reading frame 20	228.0	[0..13]	[200..19]
gi\|37681741 - gi\|37681741\|gb\|AAQ97748.1\| chromosome 20 open reading frame 20 [Danio rerio]	219.0	[0..8]	[200..10]
gi\|54636688\|gb\|E... - GA12503-PA [Drosophila pseudoobscura], GA12503 [Drosophila pseudoobscura pseudoobscura] gi\|125810517, gi... - gi\|54636688\|gb\|EAL26091.1\| GA12503 [Drosophila pseudoobscura pseudoobscura], gi\|125810517\|ref\|XP_001...	208.0	[0..1]	[201..1]
gi\|50758767 - gi\|50758767\|ref\|XP_417408.1\| PREDICTED: similar to Protein C20orf20 [Gallus gallus]	193.0	[0..9]	[200..14]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAKDKGLAV AGTAAPLPAA LDHEWSAEEE LQLFHAMEGL RPVGINKHFY MSCIVQRLSK  60
   61 SLNREMPSEL IWRHLGTMYK LKELDDLESL PFPNEEREFS LPEQDYGTLQ TKKTVEVHAN 120
  121 EEA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.346787
Match:	PF07904.4
Description:	No description for PF07904.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [124-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEAQSAPPTA ETNGKAPPAT KTPVPTNSTK DGDKKPVAKP QEQLPKRPAK RTRGSMSNES  60
   61 ISPSTTPPPV QSNKRRRI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits