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View Structure Prediction Details

Protein: gcl-PA
Organism: Drosophila melanogaster
Length: 569 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gcl-PA.

Description E-value Query
Range
Subject
Range
gi|54636706, gi|... - gi|54636706|gb|EAL26109.1| GA21057 [Drosophila pseudoobscura pseudoobscura], gi|125810577|ref|XP_001...
gi|54636706|gb|E... - GA21057-PA [Drosophila pseudoobscura], GA21057 [Drosophila pseudoobscura pseudoobscura]
399.0 [0..1] [569..1]

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Predicted Domain #1
Region A:
Residues: [1-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQIVGSMHM NVAEVFSNRR KRKRSTDSSL GKDDPAQLDT TQPKKKKLLT TTQYIYKALF  60
   61 KEEKNSDVAV MALDKVWHLH KVYLSQSPYF YTMFNGTWRE AQQNFIQITI LDDRITVASL 120
  121 DAVFGSMYSD EIEIESADVI SVLATATLFH LDGIIDKCAE VMVDNISPET AI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.522879
Match: 2if5A
Description: No description for 2if5A was found.

Predicted Domain #2
Region A:
Residues: [173-319]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QYYEAACQYG VVGVKKSTFQ WFQINLLSIY SKQPNLLRHI SIELMSALTA SPDLYVMQTE  60
   61 FSLYTLLRTW MFLRLHPDYD PEDPVQRAEA LKTQELLVNA GVETHAPSGD VVQWTYFTSR 120
  121 SEERSFLATP EGQPYVKVFQ KLRTQYL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.01
Match: 2eqxA
Description: No description for 2eqxA was found.

Predicted Domain #3
Region A:
Residues: [320-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNHYMDLKII YNDNIIPKEW LYRHIHNHWD ALLRIDHGQE DCSPQQLDDE QFFENCMRCG  60
   61 RMLLEPGYQK WRWTGFNFGM DLILIMDSRR LNIRRHHRHE HERVLSL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.0
Match: 1zgkA
Description: 1.35 angstrom structure of the Kelch domain of Keap1
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [427-569]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTKRKFMVRT TVTSINAQRQ AVFTQTSEIC SLSLEKNEEV PLMVLDPKLV HPLLISINML  60
   61 VVMPPNQSFK EIVPLSEEAT TSLSIPISEI GANSDRPLSP SSADDSAVFI GDSEPSTPSS 120
  121 PAPRPRIAWS ASETGAICGQ LAC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle