YRC Public Data Repository - Protein Structure Prediction

Protein:	Lcp3-PA, FBpp0305732
Organism:	Drosophila melanogaster
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Lcp3-PA, FBpp0305732.

Description	E-value	Query Range	Subject Range
gi\|108875723, gi... - gi\|157118418\|ref\|XP_001659105.1\| Pupal cuticle protein, putative [Aedes aegypti], gi\|108875723\|gb\|EA...	136.0	[0..1]	[112..1]
AGAP009875-PA - CPR77: cuticular protein RR-1 family (CPR77)\|protein_coding\|3R:44651286:44651883:-1\|gene:AGAP009875 gi\|158298840, gi... - gi\|58391952\|ref\|XP_318995.2\| ENSANGP00000014836 [Anopheles gambiae str. PEST], gi\|55236096\|gb\|EAA144...	130.0	[0..5]	[106..7]
gi\|91083823 - gi\|91083823\|ref\|XP_973633.1\| PREDICTED: similar to Cuticular protein 65Az CG12330-PA [Tribolium cast...	129.0	[0..1]	[112..248]
gi\|194108650, gi... - gi\|195176010\|ref\|XP_002028666.1\| GL11748 [Drosophila persimilis], gi\|194108650\|gb\|EDW30693.1\| GL1174... gi\|125979215, gi... - gi\|54642405\|gb\|EAL31154.1\| GA14899 [Drosophila pseudoobscura pseudoobscura], gi\|125979215\|ref\|XP_001... gi\|125979215\|ref... - GA14899-PA [Drosophila pseudoobscura], GA14899 [Drosophila pseudoobscura pseudoobscura]	128.0	[0..1]	[109..1]
gi\|195332472, gi... - gi\|195332472\|ref\|XP_002032921.1\| GM21031 [Drosophila sechellia], gi\|194124891\|gb\|EDW46934.1\| GM21031... Lcp4-PA, FBpp0305733 - The gene Larval cuticle protein 4 is referred to in FlyBase by the symbol Dmel\Lcp4 (CG2044, FBgn000...	127.0	[0..1]	[112..1]

Back

Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKILLVCSL AALVAANANV EVKELVNDVQ PDGFVSKLVL DDGSASSATG DIHGNIDGVF  60
   61 EWISPEGVHV RVSYKADENG YQPQSDLLPT PPPIPAAILK AIAYIEANPS KN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.957
Match:	1wgoA
Description:	Solution structure of the PKD domain from human VPS10 domain-containing receptor SorCS2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits