YRC Public Data Repository - Protein Structure Prediction

Protein:	Lcp1-PA, FBpp0305735
Organism:	Drosophila melanogaster
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Lcp1-PA, FBpp0305735.

Description	E-value	Query Range	Subject Range
gi\|85223, gi\|7771 - pir\|\|A25299 cuticle protein I precursor - fruit fly (Drosophila melanogaster), gi\|7771\|emb\|CAA23487....	148.0	[0..1]	[130..1]
gi\|108875723, gi... - gi\|157118418\|ref\|XP_001659105.1\| Pupal cuticle protein, putative [Aedes aegypti], gi\|108875723\|gb\|EA...	140.0	[0..1]	[125..1]
gi\|118787584, gi... - gi\|118787584\|ref\|XP_316152.3\| ENSANGP00000019740 [Anopheles gambiae str. PEST], gi\|116126872\|gb\|EAA1...	135.0	[0..2]	[124..2]
gi\|91083823 - gi\|91083823\|ref\|XP_973633.1\| PREDICTED: similar to Cuticular protein 65Az CG12330-PA [Tribolium cast...	134.0	[0..7]	[128..248]

Back

Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKFVMICAV LGLAVANPPV PHSLGRSEDV HADVLSQSDD VRADGFDSSL HTSNGIEQAA  60
   61 SGDAHGNIHG NFGWISPEGE HVEVKYVANE NGYQPSGAWI PTPPPIPEAI ARAVAWLESH 120
  121 PPAPEHPRHH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.376751
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits