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View Structure Prediction Details

Protein: CG8708-PB, FBpp0...
Organism: Drosophila melanogaster
Length: 450 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8708-PB, FBpp0....

Description E-value Query
Range
Subject
Range
gi|220953220 - gi|220953220|gb|ACL89153.1| CG9520-PA [synthetic construct]
C1GalTA-PB, C1Ga... - The gene Core 1 Galactosyltransferase A is referred to in FlyBase by the symbol Dmel\C1GalTA (CG9520...
312.0 [0..1] [377..1]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSASLLSRS LLTEAPRSKN RSVFTLIAGL VVGYCLAQIF SSIAPHESLY PYLSRRFSDS  60
   61 QVATGGQLAP EQSGLKHDHR NDN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [84-335]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSVAEQLKKE VRILCWVMTN PTNHKKKARH VKRTWGKRCN ILLFMSSGAD EELPTVKLDV  60
   61 GEGRENLWAK VKEAFKYVYH HHYNDADFFY KADDDTYAVI ENMRYMLYPY NPETPVHFGF 120
  121 KFKPFVKQGY MSGGAGYILS REALRRFVVE GIPNPKMCLP GTVVNEDIEI GRCMENLNVT 180
  181 AGDSRDEIGR GRMFPFIPEH HLIPAKADKN FWYWNYLYYK TDDGLDCCSD LAISFHYVAP 240
  241 NSFYVLDYLI YH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.0
Match: 2j0aA
Description: No description for 2j0aA was found.

Predicted Domain #3
Region A:
Residues: [336-450]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKPYGLLRSL EPLPAKLKVG QFLPPPVEAR GRLASNEDSA DDYDRIYTTT TEKPKEPDAR  60
   61 EMDSKEVEKE DAKYREKLSK EDEEREDSRK TDNDSEYTEE ETEKRSKSKE TSKEN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle