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View Structure Prediction Details

Protein: CG8708-PA
Organism: Drosophila melanogaster
Length: 310 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8708-PA.

Description E-value Query
Range
Subject
Range
gi|220953220 - gi|220953220|gb|ACL89153.1| CG9520-PA [synthetic construct]
C1GalTA-PB, C1Ga... - The gene Core 1 Galactosyltransferase A is referred to in FlyBase by the symbol Dmel\C1GalTA (CG9520...
271.0 [0..1] [307..1]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSASLLSRS LLTEAPRSKN RSVFTLIAGL VVGYCLAQIF SSIAPHESLY PYLSRRFSDS  60
   61 QVATGGQLAP 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [71-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQSGLKHDHR NDNVSVAEQL KKEVRILCWV MTNPTNHKKK ARHVKRTWGK RCNILLFMSS  60
   61 GADEELPTVK LDVGEGRENL WAKVKEAFKY VYHHHYNDAD FFYKADDDTY AVIENMRYML 120
  121 YPYNPETPVH FGFKFKPFVK QGYMSGGAGY ILSREALRRF VVEGIPNPKM CLPGTVVNED 180
  181 IEIGRCMENL NVTAGDSRDE IGRGRMFPFI PEHHLIPAKA DKNFWYWNYL YYKTDDVSFA 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 2j0aA
Description: No description for 2j0aA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle