YRC Public Data Repository - Protein Structure Prediction

Protein:	Obp44a-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Obp44a-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|27414067 - gi\|27414067\|gb\|AAO12100.1\| odorant-binding protein AgamOBP9 [Anopheles gambiae] gi\|31203787, gi\|... - gi\|31203787\|ref\|XP_310842.1\| odorant binding protein (AGAP000278-PA) [Anopheles gambiae str. PEST], ...	117.0	[0..1]	[143..1]
gi\|125773007\|ref... - GA14801-PA [Drosophila pseudoobscura], GA14801 [Drosophila pseudoobscura pseudoobscura] gi\|54637494, gi\|... - gi\|54637494\|gb\|EAL26896.1\| GA14801 [Drosophila pseudoobscura pseudoobscura], gi\|125773007\|ref\|XP_001... gi\|195158829, gi... - gi\|195158829\|ref\|XP_002020287.1\| GL13898 [Drosophila persimilis], gi\|194117056\|gb\|EDW39099.1\| GL1389...	117.0	[0..1]	[141..1]
gi\|220958606, gi... - gi\|220958606\|gb\|ACL91846.1\| Obp99a-PA [synthetic construct], gi\|220949486\|gb\|ACL87286.1\| Obp99a-PA [... Obp99a-PA, FBpp0... - The gene Odorant-binding protein 99a is referred to in FlyBase by the symbol Dmel\Obp99a (CG18111, F...	117.0	[0..1]	[141..1]
gi\|108878500, gi... - gi\|94468522\|gb\|ABF18110.1\| odorant binding protein [Aedes aegypti], gi\|157111228\|ref\|XP_001651445.1\|...	112.0	[0..1]	[143..1]
gi\|5081571 - gi\|5081571\|gb\|AAD39447.1\|AF133635_1 pheromone binding protein [Ostrinia nubilalis]	107.0	[0..4]	[131..7]
gi\|5081561 - gi\|5081561\|gb\|AAD39442.1\|AF133630_1 pheromone binding protein [Ostrinia furnacalis]	106.0	[0..4]	[131..7]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNAVAILLC ALLGLASASD YKLRTAEDLQ SARKECAASS KVTEALIAKY KTFDYPDDDI  60
   61 TRNYIQCIFV KFDLFDEAKG FKVENLVAQL GQGKEDKAAL KADIEKCADK NEQKSPANEW 120
  121 AFRGFKCFLG KNLPLVQAAV QKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.39794
Match:	1dqeA
Description:	Pheromone binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
odorant binding	5.06322454789787	bayes_pls_golite062009
pheromone binding	3.11551486454066	bayes_pls_golite062009
phenylalkylamine binding	1.62981757488245	bayes_pls_golite062009
binding	1.40235773612936	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: