YRC Public Data Repository - Protein Structure Prediction

Protein:	CG11196-PA
Organism:	Drosophila melanogaster
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG11196-PA.

Description	E-value	Query Range	Subject Range
gi\|114674911 - gi\|114674911\|ref\|XP_524071.2\| PREDICTED: solute carrier family 25, member 23 [Pan troglodytes]	266.0	[0..9]	[281..367]
gi\|74006830 - gi\|74006830\|ref\|XP_537947.2\| PREDICTED: similar to ADP/ATP translocase 3 (Adenine nucleotide translo...	265.0	[0..1]	[280..173]
gi\|33598954 - gi\|33598954\|ref\|NP_037518.2\| solute carrier family 25 member 24 isoform 1 [Homo sapiens]	261.0	[0..9]	[281..195]
gi\|109012617 - gi\|109012617\|ref\|XP_001083681.1\| PREDICTED: similar to solute carrier family 25 member 24 isoform 2 ...	260.0	[0..9]	[281..176]

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Predicted Domain #1

Region A:
Residues: [1-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEDSSRRLP RWWFGGVCAA IAVTGTHPID LIKVQLQTQS QADRKTVGEI LKGIHERSGI  60
   61 LGFYNGISAS WFRQLTYTTT RFALYEAGKD YVDTQKVSSK MALATFAGIV GGIVGVPGDV 120
  121 VTVRLQNDVK LPEEKRRNYK HVFDGLFRIY KEEGVSSLFR GTVPAVSRAV LLTIGTNAAY 180
  181 DQVKQMLKIA TGAGEGVPLH FATSTIAGCI AVVITQPLDV IKTTFMNAQP GEFSGIGGAF 240
  241 LSTAKQGPLA FYKGFIPALI RVSPNTIITF VLYEQARMRF GYLPPDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.0
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits