YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CG8726-PA
Organism: Drosophila melanogaster
Length: 563 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8726-PA.

Description E-value Query
Range
Subject
Range
CG8726-PB - This gene is referred to in FlyBase by the symbol Dmel\CG8726 (CG8726, FBgn0033244). It is a protein...
358.0 [0..1] [563..84]

Back

Predicted Domain #1
Region A:
Residues: [1-86]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPEFIAERK QALQEYINAV LMNPILASSL PAKRFVDPES YSQSFHDHAV QNAMLCLRND  60
   61 TTWSLGGSMG AIGWRLRKHY FKVTTK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.69897
Match: 1xteA
Description: crystal structure of CISK-PX domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [87-446]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPEKSSNKQL VKSGSQTHQS KHFAAGSSNG SGHSIDAGTL DPGSEVVAEW LEYGPDKFID  60
   61 EKEIGGIMKS LMGLQHPHIE PVLLAAHTEN GCLVIRKFHK HGTLKDVLCM AANPKNTFLS 120
  121 KYGNPKGRTA LSMKQVATYG KQILEALIFL HSKGYAYGHL HSGNIVIVDD CVKLLDIENF 180
  181 LLGVPAFYRP FFMQHSKIHA IETIDVYCFG HVLFEMAMGY PLQESVVRQI TECPEALKCL 240
  241 LESILSKEAC KAGLPTLEQL LGHRFFLQYA STESAGAAAN AEKPYFKLSL NAKELLKQAA 300
  301 IKSENRLRDE QKSVKNQKRI VRVQELMSSE EEKRKSKQKA KLEHKQSKLK QQSSIQTNNG 360
  361 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.0
Match: 2qnjA
Description: No description for 2qnjA was found.

Predicted Domain #3
Region A:
Residues: [447-563]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLSLVAATAA AASSSTTVVG ELCGTDSFNR SDSTPEEPTT LAGIKSPPLT PGPHLGSIYQ  60
   61 QELPSTTGAP VERQSSTPNM LSEDAEGGDG DEPTRSALLE SICKFNRGSL RKVRSND

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle