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View Structure Prediction Details

Protein: Kdm4A-PA
Organism: Drosophila melanogaster
Length: 495 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Kdm4A-PA.

Description E-value Query
Range
Subject
Range
gi|125810398, gi... - gi|54636650|gb|EAL26053.1| GA13980 [Drosophila pseudoobscura pseudoobscura], gi|125810398|ref|XP_001...
gi|125810398|ref... - GA13980-PA [Drosophila pseudoobscura], GA13980 [Drosophila pseudoobscura pseudoobscura]
426.0 [0..1] [495..1]

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Predicted Domain #1
Region A:
Residues: [1-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTRSSFADE EQNKVPRIMT FRPSYEEFQN FSAYIEYIES RGAHLAGLAK IQPPAEWVPR  60
   61 KSGYDIDNIN MTIPAPICQV VTGAHGVYQQ INIQQRRQMT LRQFMEKANS ELHQTPRHFD 120
  121 YDDLERKYWK NITYISPLYA ADVKGSLSDE DLDVWNIGRL DTILNLVNTD YNIIIDGVNT 180
  181 AYLYFGMWKS SFAWHTEDMD LYSINYLHFG APKTWYAIPP AYGRRLEKLA NETFSENYQE 240
  241 CNAYLRHKMT MISPKVLRQH NIPYNKITQE AGEIMITFPF GYHAGFNHGF NGAESTNFAS 300
  301 KRWIEYGKRA SICRCRSDMV KISMETFVRR FQPERYDNWL KGQDMGCHPE EPGKICAAAP 360
  361 PTLNEYEKQE NLRAAKSEEE SPQKRGCSLA GNGCERN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 2oq6A
Description: No description for 2oq6A was found.

Predicted Domain #2
Region A:
Residues: [398-495]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AESAEDVDDK ASVSSYSSCR QLQPVVKLRK LPTIASVPEP SSAPKRYDFN TEAVVRVKRL  60
   61 WNELPCPDRG ANLLTNGVVK NTKRMRFQTK VLTLDDED

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle