YRC Public Data Repository - Protein Structure Prediction

Protein:	U2A-PA
Organism:	Drosophila melanogaster
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for U2A-PA.

Description	E-value	Query Range	Subject Range
gi\|90591507, gi\|... - gi\|90591507\|ref\|ZP_01247149.1\| PKD:Leucine-rich repeat [Flavobacterium johnsoniae UW101], gi\|9043256...	174.0	[0..2]	[264..177]
gi\|55770563 - ref\|XP_550272.1\| putative receptor-like protein kinase INRPK1 [Oryza sativa (japonica cultivar-group... gi\|115434762, gi... - gi\|55770563\|ref\|XP_550272.1\| putative receptor-like protein kinase INRPK1 [Oryza sativa (japonica cu...	174.0	[0..2]	[264..351]
BRL2_ARATH - Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1	171.0	[0..2]	[265..209]
gi\|116309677, gi... - gi\|125549425\|gb\|EAY95247.1\| hypothetical protein OsI_016480 [Oryza sativa (indica cultivar-group)], ...	171.0	[0..2]	[262..469]

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Predicted Domain #1

Region A:
Residues: [1-59]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLTPELIN QSMQYINPCR ERELDLRGYK IPQIENLGAT LDQFDTIDLS DNDLRKLDN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	1a9nA
Description:	Splicesomal U2A' protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [60-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPHLPRLKCL LLNNNRILRI SEGLEEAVPN LGSIILTGNN LQELSDLEPL VGFTKLETIC  60
   61 LLINPVSTKP NYREYMAYKF PQLRLLDFRK IKQKDRQAAQ EFFRTKQGKD VLKEISRKSK 120
  121 MSAAAAIAAE AGNGKGRGSE GGRLANPQDM QRIREAIKRA SSLAEVERLS QILQSGQLPD 180
  181 KFQHEMEAVA QNGAGHNGSG AVAMEY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.69897
Match:	2p1mB
Description:	No description for 2p1mB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits