YRC Public Data Repository - Protein Structure Prediction

Protein:	Gr43b-PA
Organism:	Drosophila melanogaster
Length:	430 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Gr43b-PA.

Description	E-value	Query Range	Subject Range
Gr36d-PA - The gene Gr36d is referred to in FlyBase by the symbol Dmel\Gr36d (CG31750, FBgn0046888). It is a pr...	532.0	[0..8]	[418..2]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGSHSPEA MWSATNFRRH QRKPNQVLHR WFFKGSAWII YAIACGLHFF KLHYNERTNQ  60
   61 VEESQYHRIW SKIVVVLKVI LLASPYLQYF VLGLGIYIHI TLVQDSKAQN FLMSLIVLGI 120
  121 VIGVLRRLLI FLHLKRDRRF LKHTVNEILH ITSALEQKFG MEYKCDSTLL VVYLAKLWIL 180
  181 TVMLDSLWYK PYFLSSIFLY WVLLEYCFAG YFIYQLILLS WYHTIILFLQ RFIE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [235-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DHANRLDIEL HYHRRLIPLF ELHLRINNLH KHVRDNVSWL STSVYLMIFT CIFNAELLIE  60
   61 CSLFAGDELE NKIYIITDGC LGPVCVPILY VLILGMCTDR FRDAEVQLQQ LFVIVQGLYM 120
  121 RKVRPHLLIA MVLENEHTSL IIHQKLKPLE NMIILDITCD REFVMDYIVT VILTALSLVQ 180
  181 YTISTGGNIS ECVTHK