| Protein: | pwn-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1307 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pwn-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
406.0 | [0..21] | [1307..6] |
|
Region A: Residues: [1-129] |
1 11 21 31 41 51
| | | | | |
1 MTEWLLVGIE REPGQHESVS QISPKSSSHR SPDRQRIEST MADSVNGLAE GQSSPLDVND 60
61 NETRAERVER SASPILHDRQ PIGPNDVHFP EDLEKDVSAG RYFHYNIKPT GTFDNQDEQP 120
121 ERTHQGIRA
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [130-345] |
1 11 21 31 41 51
| | | | | |
1 GKTLSQGGSS SEQSFLGRGD LRPLVSGSPI RPSPSNTATS ATAASATQAP HSPRQNGNPD 60
61 IQDIITGIVK LLNGNVNVHA NTQGIRRPSA SRINNRGPPR ISEAQNLPID YEAQKPGTSM 120
121 RPPPYPFDRP ERPFITGVPI PEQIVPVRPG FVSNRPPWYR NKPRPPIATS VGGNRRPLPQ 180
181 YKPLPAPPVQ APLQPQDPLD RKNEQEKEQN HQEQPQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [346-545] |
1 11 21 31 41 51
| | | | | |
1 PTDDVVLPTD TTYDSEFSNE DANAQYIEVS DQDTDATGGE VEDELQPPPP PPSTTNNPPT 60
61 TPTNPSKKKH KPKPGSEKKK LPEESPQDEG FSTIIETSSV VHTVMGMSST YVPMSMDSSE 120
121 SLGLDPSTEE VIFMTANRTP TLEPSVTSSL GTSSSSNPAS AIQPTSSKEH TKTTTTTTTT 180
181 TSSSTSTTTS TTTPPSTESV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [546-745] |
1 11 21 31 41 51
| | | | | |
1 SPNSSNANTN ATPPAPYHPR PGIVLDDPEF KPGGRPRPPV QRPPAQQTLP LPAVQPTRQH 60
61 LPPGYGEIFD VTLSAIQGPG PKGSGSQQTI NIKPYGSYAA GGGQGDIIVS ASGDDGFVSI 120
121 DGKRTYINLF GDPTDPPAGA TTPATRLPQL PGSGSGSGSG SGTGSGGAST PGVGVSSGGG 180
181 GGSGSSISPA APANAVTQSS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [746-1202] |
1 11 21 31 41 51
| | | | | |
1 GGYVVPETEV VDLQGHSKPQ GGAPTTNAGP TRPHYRQRPT QPPVRIDTCI VGDDSTCDQA 60
61 QHERCKTDNG VSSCHCRPGY SRRKHREPCR RVISFHLGMR VDRIYEHRIV WDTKLMDKHS 120
121 EPFGQLSYES IRALDSAMSM TPYSDEFMEA KVNNIYRGDP NLGGSGVYVN MTIKLDESVE 180
181 TLRPNLRSDV QKHLLGVLHR RNNNIGNSVL YVSSPEGAVS ALQDLDECQS PELNDCHSGA 240
241 SCSNTWGSFR CACEAGLRDP WADQPARSGR ECQACADSVC NNHGTCSYAE DGAQLCTCDS 300
301 SHYGAQCEID GEVLGVAIGA SVAAIIIIVL TLVCLIMWSR RWQREQKNAM GSPVFGYMNT 360
361 APLKSAGLPQ AGYQVTLEDR MRWAQIADVM AQTNHYGAEP IGPTRPSSAM FAYPNLGAMG 420
421 MGTLGGMSLQ STMQMHPSAT LAPPVPLPRR LGLGPRS
|
| Detection Method: | |
| Confidence: | 23.221849 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.279921135544 | bayes_pls_golite062009 |
| binding | 1.20290372802439 | bayes_pls_golite062009 |
| receptor binding | 1.07208480206832 | bayes_pls_golite062009 |
| ErbB-2 class receptor binding | 0.3648038027933 | bayes_pls_golite062009 |
| ErbB-3 class receptor binding | 0.0872631558320198 | bayes_pls_golite062009 |
| growth factor activity | 0.04792804882584 | bayes_pls_golite062009 |
|
Region A: Residues: [1203-1307] |
1 11 21 31 41 51
| | | | | |
1 NGMRTLENSS SSEEEDRADL LGRNFQVPRP KSRSNGSIAN QSGIYYDVDY EPSGNGIGNS 60
61 SVDHLYGSQN QSVTHSSGHS HIPGPQGIPM STYTSGRAPS SYYMK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
