YRC Public Data Repository - Protein Structure Prediction

Protein:	SdhB-PA
Organism:	Drosophila melanogaster
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SdhB-PA.

Description	E-value	Query Range	Subject Range
gi\|54635329, gi\|... - gi\|54635329\|gb\|EAL24732.1\| GA17170 [Drosophila pseudoobscura pseudoobscura], gi\|125806762\|ref\|XP_001... gi\|54635329\|gb\|E... - GA17170-PA [Drosophila pseudoobscura], GA17170 [Drosophila pseudoobscura pseudoobscura] gi\|194109372, gi... - gi\|195149159\|ref\|XP_002015525.1\| GL11120 [Drosophila persimilis], gi\|194109372\|gb\|EDW31415.1\| GL1112...	282.0	[0..1]	[297..1]
SDHB_CHICK - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus GN=SDHB PE=...	269.0	[0..1]	[288..1]
gi\|47222756 - gi\|47222756\|emb\|CAG01723.1\| unnamed protein product [Tetraodon nigroviridis]	267.0	[0..35]	[288..28]
gi\|28611029 - gi\|28611029\|emb\|CAD62367.1\| succinate dehydrogenase [Triticum aestivum]	264.0	[0..2]	[277..3]
gi\|25284631 - pir\|\|D87686 succinate dehydrogenase, iron-sulfur protein [imported] - Caulobacter crescentus gi\|16127756, gi\|... - gi\|16127756\|ref\|NP_422320.1\| succinate dehydrogenase iron-sulfur subunit [Caulobacter crescentus CB1... gi\|220965750, gi... - gi\|221236577\|ref\|YP_002519014.1\| succinate dehydrogenase iron-sulfur protein [Caulobacter crescentus...	263.0	[0..24]	[282..5]
SDHB_BOVIN - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Bos taurus GN=SDHB PE=2 S...	263.0	[0..2]	[288..1]
gi\|57044796 - gi\|57044796\|ref\|XP_535392.1\| PREDICTED: similar to Succinate dehydrogenase [ubiquinone] iron-sulfur ...	263.0	[0..13]	[288..6]
gi\|224031477, gi... - gi\|4803711\|emb\|CAB42659.1\| iron sulfur subunit of succinate dehydrogenase [Zea mays], gi\|224031477\|g...	263.0	[0..1]	[277..1]
gi\|114554304, gi... - gi\|114554304\|ref\|XP_001155457.1\| PREDICTED: succinate dehydrogenase complex, subunit B, iron sulfur ... SDHB - succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	262.0	[0..10]	[288..1]
gi\|55245577, gi\|... - gi\|58378535\|ref\|XP_308512.2\| ENSANGP00000024398 [Anopheles gambiae str. PEST], gi\|55245577\|gb\|EAA454...	262.0	[0..45]	[296..1]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLATEARQIL SRVGSLVARN QMRAISNGTA QLEQQAQPKE AQEPQIKKFE IYRWNPDNAG  60
   61 EKPYMQTYEV DLRECGPMVL DALIKIKNEM DPTLTFRRSC REGICGSCAM NIGGTNTLAC 120
  121 ISKIDINTSK SLKVYPLPHM YVVRDLVPDM NNFYEQYRNI QPWLQRKNEA GEKKGKAQYL 180
  181 QSVEDRSKLD GLYECILCAC CSTSCPSYWW NAEKYLGPAV LMQAYRWIID SRDENSAERL 240
  241 NKLKDPFSVY RCHTIMNCTR TCPKGLNPGR AIAEIKKLLS GLASKPAPKL ETAALHK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.522879
Match:	1yq3B
Description:	Avian respiratory complex ii with oxaloacetate and ubiquinone
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits