YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0305157, Eb1...
Organism:	Drosophila melanogaster
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0305157, Eb1....

Description	E-value	Query Range	Subject Range
Eb1-PE - The gene Eb1 is referred to in FlyBase by the symbol Dmel\Eb1 (CG3265, FBgn0027066). It is a protein... gi\|220950444 - gi\|220950444\|gb\|ACL87765.1\| Eb1-PE [synthetic construct]	467.0	[0..1]	[291..1]
gi\|125806750, gi... - gi\|54635323\|gb\|EAL24726.1\| GA17043-PA [Drosophila pseudoobscura], gi\|125806750\|ref\|XP_001360152.1\| G...	428.0	[0..1]	[291..1]
gi\|12751130 - gi\|12751130\|gb\|AAK07556.1\| EBF3-L [Homo sapiens]	420.0	[0..1]	[290..3]
gi\|60832326 - gi\|60832326\|gb\|AAX37006.1\| microtubule-associated protein RP/EB family member 3 [synthetic construct...	419.0	[0..1]	[290..1]
MARE3_RAT - Microtubule-associated protein RP/EB family member 3 OS=Rattus norvegicus GN=Mapre3 PE=1 SV=1 tr\|G3GXR7\|G3GXR7... - Microtubule-associated protein RP/EB family member 3 OS=Cricetulus griseus GN=I79_002559 PE=4 SV=1 MARE3_MOUSE - Microtubule-associated protein RP/EB family member 3 OS=Mus musculus GN=Mapre3 PE=1 SV=1	418.0	[0..1]	[290..1]
gi\|57098179 - gi\|57098179\|ref\|XP_532901.1\| PREDICTED: similar to microtubule-associated protein, RP/EB family, mem... gi\|76630043 - gi\|76630043\|ref\|XP_607271.2\| PREDICTED: similar to microtubule-associated protein, RP/EB family, mem...	418.0	[0..1]	[290..1]
gi\|109102362 - gi\|109102362\|ref\|XP_001088113.1\| PREDICTED: similar to dihydropyrimidinase-like 5 [Macaca mulatta]	418.0	[0..1]	[290..778]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVNVYSTNV TSENLSRHDM LAWVNDCLQS QFSKIEELCT GAAYCQFMDM LFPNSVPVKR  60
   61 VKFRTNLEHE YIQNFKILQA GFKKMSVDKI IPIDKLVKGR FQDNFEFLQW FKKFFDANYD 120
  121 GRDYDASAVR EGAPMGFGSG AVKSLPGTAA SGVSSSYRRG PSATTRPAMT SAVKPTVSKV 180
  181 LPRTNNAAPA SRINACANST GTVKKNDVSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.39794
Match:	1wyoA
Description:	Solution structure of the CH domain of human microtubule-associated protein RP/EB family member 3
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [211-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVNNQQIEEM SNQVMDMRIN LEGLEKERDF YFSKLRDIEI LCQEADDAEA HPIIQKILDI  60
   61 LYATEDGFAP PDDAPPEDEE Y

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	1txqB
Description:	Crystal structure of the EB1 C-terminal domain complexed with the CAP-Gly domain of p150Glued
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits