YRC Public Data Repository - Protein Structure Prediction

Protein:	Vha16-PD, Vha16-...
Organism:	Drosophila melanogaster
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Vha16-PD, Vha16-....

Description	E-value	Query Range	Subject Range
gi\|58381684, gi\|... - gi\|58381684\|ref\|XP_311406.2\| ENSANGP00000025336 [Anopheles gambiae str. PEST], gi\|55242897\|gb\|EAA070...	179.0	[0..4]	[159..37]
gi\|109127279 - gi\|109127279\|ref\|XP_001085529.1\| PREDICTED: similar to Vacuolar ATP synthase 16 kDa proteolipid subu...	177.0	[0..28]	[159..288]
gi\|52789283 - gi\|52789283\|gb\|AAH83129.1\| Atp6v0c protein [Mus musculus]	177.0	[0..6]	[159..45]
gi\|58261016, gi\|... - gi\|58261016\|ref\|XP_567918.1\| hydrogen ion transporter [Cryptococcus neoformans var. neoformans JEC21...	167.0	[0..2]	[158..24]
gi\|49656538, gi\|... - gi\|50424561\|ref\|XP_460869.1\| hypothetical protein DEHA0F12683g [Debaryomyces hansenii CBS767], gi\|49... gi\|49656538 - gi\|49656538\|emb\|CAG89219.1\| DEHA2F11638p [Debaryomyces hansenii]	162.0	[0..5]	[159..1]
gi\|27694747 - gi\|27694747\|gb\|AAH43805.1\| MGC64475 protein [Xenopus laevis]	162.0	[0..2]	[159..51]
gi\|195171057, gi... - gi\|195171057\|ref\|XP_002026327.1\| GL20293 [Drosophila persimilis], gi\|194111229\|gb\|EDW33272.1\| GL2029... gi\|125811646, gi... - gi\|54637138\|gb\|EAL26541.1\| GA16335 [Drosophila pseudoobscura pseudoobscura], gi\|125811646\|ref\|XP_001... gi\|54637138\|gb\|E... - GA16335-PA [Drosophila pseudoobscura], GA16335 [Drosophila pseudoobscura pseudoobscura]	161.0	[0..1]	[159..1]
gi\|49067667, gi\|... - gi\|71003978\|ref\|XP_756655.1\| vacuolar ATP synthase 16 kDa proteolipid subunit [Ustilago maydis 521],...	160.0	[0..6]	[159..8]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEVSSDNP IYGPFFGVMG AASAIIFSAL GAAYGTAKSG TGIAAMSVMR PELIMKSIIP  60
   61 VVMAGIIAIY GLVVAVLIAG ALEEPSKYSL YRGFIHLGAG LAVGFSGLAA GFAIGIVGDA 120
  121 GVRGTAQQPR LFVGMILILI FAEVLGLYGL IVAIYLYTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.30103
Match:	2bl2A
Description:	The membrane rotor of the V-type ATPase from Enterococcus hirae
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits