YRC Public Data Repository - Protein Structure Prediction

Protein:	CG11211-PA
Organism:	Drosophila melanogaster
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG11211-PA.

Description	E-value	Query Range	Subject Range
gi\|4878035, gi\|4... - gi\|4878035\|gb\|AAD24546.2\| neurocan core protein precursor [Gallus gallus], gi\|45382043\|ref\|NP_990071...	144.0	[0..6]	[172..1036]
gi\|76620846 - gi\|76620846\|ref\|XP_872507.1\| PREDICTED: neurocan isoform 2 [Bos taurus]	144.0	[0..6]	[170..1094]
gi\|73986046 - gi\|73986046\|ref\|XP_541924.2\| PREDICTED: similar to Neurocan core protein precursor (Chondroitin sulf...	142.0	[0..6]	[170..1073]
NCAN_RAT - Neurocan core protein OS=Rattus norvegicus GN=Ncan PE=1 SV=1	141.0	[0..6]	[170..1009]
NCAN_MOUSE - Neurocan core protein OS=Mus musculus GN=Ncan PE=1 SV=1	141.0	[0..6]	[170..1020]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTILFTIFS LPFLVIASSN INNTDLTFYQ KCNPLLQCNA YFSVAGFAEV NWLEANHVCN  60
   61 RVGAVLATVR NEEQHQLMLH YVNRKERIFG NRTFWLGATN LVDRSYFWTW MSTGIPVTYA 120
  121 QWSRREPKSD RTGQDACLVL GTDNLWHSEP CQRKHNFICE NVCQLNYSGL DKRVYI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	2h2rA
Description:	No description for 2h2rA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits