YRC Public Data Repository - Protein Structure Prediction

Protein:	CG8343-PA
Organism:	Drosophila melanogaster
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8343-PA.

Description	E-value	Query Range	Subject Range
gi\|37953324 - gi\|37953324\|gb\|AAP44494.1\| aggrecan [Bos taurus]	149.0	[0..8]	[181..2122]
gi\|57047785 - gi\|57047785\|ref\|XP_536187.1\| PREDICTED: similar to Aggrecan core protein precursor (Cartilage-specif...	147.0	[0..8]	[181..2089]
gi\|45384426, gi\|... - ref\|NP_990286.1\| chondroitin sulfate proteoglycan core protein [Gallus gallus], gi\|1699007\|gb\|AAC60...	146.0	[0..8]	[181..1864]
gi\|532344, gi\|11... - gi\|532344\|gb\|AAA21000.1\| aggrecan, gi\|11990616\|ref\|NP_071526.1\| aggrecan [Rattus norvegicus]	145.0	[0..8]	[180..1919]
gi\|47226732 - gi\|47226732\|emb\|CAG07891.1\| unnamed protein product [Tetraodon nigroviridis]	142.0	[0..22]	[180..2330]
gi\|109082372 - gi\|109082372\|ref\|XP_001091462.1\| PREDICTED: aggrecan 1 [Macaca mulatta]	142.0	[0..19]	[180..1312]
ACAN - aggrecan	142.0	[0..19]	[181..2183]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSLFLVCLV FCSAWSLPES DLLPTSPAPG NDTAEEPQLP AFSPFSLRDG RFAIGAFAKV  60
   61 NWFQAQATCA AYGYTLVSIT SEQDQRSLRN FLFNYARNQQ DLLTDPLWTS GTDLASDNNW 120
  121 VWFSKGRAVN YRNFQNGLPG YSSDNRHCLG INGINGLWVN ENCSELRYFV CEKRCQFDDD 180
  181 VN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.30103
Match:	1sl6A
Description:	Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits