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View Structure Prediction Details

Protein: PNGase-PB
Organism: Drosophila melanogaster
Length: 638 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PNGase-PB.

Description E-value Query
Range
Subject
Range
PNGase-PA, FBpp0... - The gene PNGase is referred to in FlyBase by the symbol Dmel\PNGase (CG7865, FBgn0033050). It is a p...
643.0 [0..8] [638..1]

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Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWQLVINMVD INLECVHQIE PKTRSAGQQQ QERGLKEAYL EAVRILLVLL ENILAQPENS  60
   61 MFRTIRQENK AIKEKLLSLP GCERLLEAIG FVRAPSSNAY TLPTEVSLQQ VKKYRDALSE 120
  121 RRTAWLNGTV SK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.39794
Match: 2d5uA
Description: No description for 2d5uA was found.

Predicted Domain #2
Region A:
Residues: [133-463]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPPQQSTTST TPLFIKPSVE YRHRIAFPRV LRTNNNFLQS LELYSDAVMQ YEDNLLLATG  60
   61 RTLIPVEELT EMASEKLIDI QDQIASGERQ EKEPCVRDLL LVELVNWFNT QFFQWVNNIP 120
  121 CRVCGSEESR LRRTEREGDI RVEVTVCCGQ ESKFYRYNDI SQLLVSRKGR CGEYANCFTF 180
  181 LCRALDYDAR IVHSHFDHVW TEVYSEAQMR WLHVDPSENV IDSPLMYQHG WKRHIDYILA 240
  241 YSRDDIQDVT WRYTNDHQKI LHLRKLCGEK EMVQTLDAIR AKRRQNCTAD RKLFLSQRNM 300
  301 YEVIGLTLER KPTENELKGR SSGSLSWRQS R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.39794
Match: 2f4mA
Description: The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [464-638]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEHTFTNIFV FNLSATELQK RQLNVRYSCA TDTYERYAKE GEHITILDSY KTWQKAQFSS  60
   61 KNIFRKVERD WKMAYLARLE DTDCGEIAWT FDFSKTNLKV KSYNLVFETK TFGDGKISVT 120
  121 VDATDGSASV ENATGFKIVA KLTGGKGDVA WQHTQLFRQS LNSRDYPFDL QVQLH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.221849
Match: 2g9gA
Description: No description for 2g9gA was found.

YRC Informatics Platform - Version 3.0
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