YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0303527, l(2...
Organism:	Drosophila melanogaster
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0303527, l(2....

Description	E-value	Query Range	Subject Range
gi\|20151503 - gi\|20151503\|gb\|AAM11111.1\| GM08665p [Drosophila melanogaster]	385.0	[0..1]	[279..1]
HGNC:18802\|MIM:6... - synthase mitochondrial F1 complex assembly factor 2 gi\|117645306 - gi\|117645306\|emb\|CAL38119.1\| hypothetical protein [synthetic construct] ATPAF2 - ATP synthase mitochondrial F1 complex assembly factor 2	369.0	[0..17]	[278..24]
gi\|114668878, gi... - gi\|114668880\|ref\|XP_001159122.1\| PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 ...	369.0	[0..17]	[278..24]
gi\|62656170, gi\|... - gi\|62656170\|ref\|XP_220522.3\| PREDICTED: similar to ATP synthase mitochondrial F1 complex assembly fa...	367.0	[0..17]	[278..33]
gi\|109113499 - gi\|109113499\|ref\|XP_001092786.1\| PREDICTED: similar to ATP synthase mitochondrial F1 complex assembl...	366.0	[0..18]	[278..25]
gi\|149262138, gi... - gi\|56205548\|emb\|CAI24077.1\| ATP synthase mitochondrial F1 complex assembly factor 2 [Mus musculus], ...	366.0	[0..13]	[278..27]
ATPF2_BOVIN - ATP synthase mitochondrial F1 complex assembly factor 2 OS=Bos taurus GN=ATPAF2 PE=2 SV=1	352.0	[0..13]	[278..13]
gi\|38174102, gi\|... - gi\|45360725\|ref\|NP_989036.1\| hypothetical protein LOC394633 [Xenopus (Silurana) tropicalis], gi\|3817...	351.0	[0..9]	[278..7]
gi\|57086735 - gi\|57086735\|ref\|XP_546658.1\| PREDICTED: similar to ATP synthase mitochondrial F1 complex assembly fa...	344.0	[0..37]	[278..4]

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Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGKYVVSAI RALRLTNFSQ CKGAASSFTV RHYASPPKRF YKKTSVLSGD SGYEVVLDHR  60
   61 KLKTPKGTPF IVRSEPLAIA VATEFDAQKE NIERSRMHLS ALCFTAIDNP NHLSKLDMVN 120
  121 YLLNFIATDT VLFQYDDEKD LQDLQVNEWD PVIAWFNQRY DTNLQKTMNI TPPQVSEQDK 180
  181 MNVAKHFQSY SLETLHGFIF AVDTLKSIVL ACAVIEQMLT VEKAVALARL EEEYQLKFWG 240
  241 RVEWAHDLSQ QELQARLAAA VLFVHLNCSE NLVKQKIIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.09691
Match:	2r6iA
Description:	No description for 2r6iA was found.

Predicted functions:

Term	Confidence	Notes
binding	2.14957672468792	bayes_pls_golite062009
protein binding	1.2388395457113	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: