YRC Public Data Repository - Protein Structure Prediction

Protein:	Taf13-PA
Organism:	Drosophila melanogaster
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Taf13-PA.

Description	E-value	Query Range	Subject Range
gi\|21300210, gi\|... - gi\|31224258\|ref\|XP_317417.1\| ENSANGP00000011751 [Anopheles gambiae str. PEST], gi\|21300210\|gb\|EAA123...	175.0	[0..1]	[136..25]
gi\|54644422, gi\|... - gi\|54644422\|gb\|EAL33163.1\| GA10547 [Drosophila pseudoobscura pseudoobscura], gi\|125984680\|ref\|XP_001... gi\|194103530, gi... - gi\|195161761\|ref\|XP_002021730.1\| GL26351 [Drosophila persimilis], gi\|194103530\|gb\|EDW25573.1\| GL2635... gi\|125984680\|ref... - GA10547-PA [Drosophila pseudoobscura], GA10547 [Drosophila pseudoobscura pseudoobscura]	171.0	[0..1]	[136..1]
gi\|157125822, gi... - gi\|157125822\|ref\|XP_001660799.1\| TATA box binding protein (TBP)-associated factor, putative [Aedes a...	159.0	[0..1]	[136..1]
gi\|49522268 - gi\|49522268\|gb\|AAH74456.1\| LOC443712 protein [Xenopus laevis]	149.0	[0..9]	[128..2]
gi\|32416440, gi\|... - gi\|32416440\|ref\|XP_328698.1\| hypothetical protein [Neurospora crassa], gi\|28924273\|gb\|EAA33426.1\| hy... gi\|85108922 - gi\|85108922\|ref\|XP_962662.1\| hypothetical protein [Neurospora crassa OR74A]	148.0	[0..4]	[125..525]
gi\|62859555, gi\|... - gi\|89269834\|emb\|CAJ82534.1\| TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated facto...	147.0	[0..9]	[128..3]
gi\|51859045, gi\|... - gi\|52219168\|ref\|NP_001004665.1\| TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated f...	147.0	[0..9]	[128..3]
gi\|113411807 - gi\|113411807\|ref\|XP_001125873.1\| PREDICTED: similar to TATA box-binding protein-associated factor, R...	147.0	[0..38]	[128..58]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNSMPEEN FEGGDFNFDD DAEDDQFVAT NSGRKRLFSK ELRCMMFGFG DDKNPYTETV  60
   61 DLLEDLVIEY IAETTHRAME IGRTGRVQVE DIIFLVRKDP RKYARVKDLL TMNEELKKAR 120
  121 KAFDEIKYVG TEGKLK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.967
Match:	1n1jB
Description:	Nuclear transcription factor Y subunit gamma (Nf-Yc2)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits