YRC Public Data Repository - Protein Structure Prediction

Protein:	CG13083-PA
Organism:	Drosophila melanogaster
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG13083-PA.

Description	E-value	Query Range	Subject Range
CG13083-PB - This gene is referred to in FlyBase by the symbol Dmel\CG13083 (CG13083, FBgn0032789). It is a prote...	138.0	[0..1]	[284..1]
gi\|88603281, gi\|... - gi\|88603281\|ref\|YP_503459.1\| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Met...	118.0	[0..11]	[227..1063]
gi\|78224021, gi\|... - gi\|78224021\|ref\|YP_385768.1\| methyl-accepting chemotaxis sensory transducer [Geobacter metallireduce...	115.0	[0..11]	[214..362]
gi\|194549613, gi... - gi\|84317299\|ref\|ZP_00965750.1\| COG0840: Methyl-accepting chemotaxis protein [Pseudomonas aeruginosa ...	113.0	[0..10]	[214..503]
gi\|94415653, gi\|... - gi\|94415653\|ref\|ZP_01295490.1\| hypothetical protein PaerP_01002620 [Pseudomonas aeruginosa PA7], gi\|...	113.0	[0..10]	[214..503]
gi\|107099702 - gi\|107099702\|ref\|ZP_01363620.1\| hypothetical protein PaerPA_01000720 [Pseudomonas aeruginosa PACS2]	113.0	[0..10]	[214..503]
gi\|218893730, gi... - gi\|218893730\|ref\|YP_002442599.1\| putative chemotaxis transducer [Pseudomonas aeruginosa LESB58], gi\|... gi\|15599829, gi\|... - gi\|9950886\|gb\|AAG08021.1\|AE004877_8 probable chemotaxis transducer [Pseudomonas aeruginosa PAO1], gi... gi\|11351176 - pir\|\|E83067 probable chemotaxis transducer PA4633 [imported] - Pseudomonas aeruginosa (strain PAO1)	113.0	[0..10]	[214..503]
gi\|46913693, gi\|... - gi\|54309261\|ref\|YP_130281.1\| methyl-accepting chemotaxis protein [Photobacterium profundum SS9], gi\|...	113.0	[0..16]	[214..463]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVRLTLLTI CIYLCAAAAE DLDSIHEIRS EVEELIKGTE ELNHGLQKVK DVQKGIEEKF  60
   61 KHQRDEIELI AGLEVAIAKL ESNVQSSFQA TASGVGNLTA IVNAIQGQNE NSIRNLTKVE 120
  121 LEIRKALEQV AANQNKYEQN LNEVASSVNS HLSEIQQLLS QAVIGELIGL DNKAKVLQEQ 180
  181 QRNIVGQSES LNSIEHTVHG VQVATSQVDH KLAALLNNQK NIERTLDGCK HKNPSHQKPH 240
  241 EIWTHPEHAP IYKPKPEGNQ GYENVYASQE EAEYLYKLWY GKGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.522879
Match:	2ch7A
Description:	No description for 2ch7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits