YRC Public Data Repository - Protein Structure Prediction

Protein:	Lectin-galC1-PB,...
Organism:	Drosophila melanogaster
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Lectin-galC1-PB,....

Description	E-value	Query Range	Subject Range
gi\|47226732 - gi\|47226732\|emb\|CAG07891.1\| unnamed protein product [Tetraodon nigroviridis]	138.0	[0..35]	[186..2345]
gi\|3253302 - gi\|3253302\|gb\|AAC24359.1\| versican V1 splice-variant precursor [Bos taurus]	138.0	[0..34]	[186..2162]
CSPG2_CHICK - Versican core protein OS=Gallus gallus GN=VCAN PE=2 SV=1	138.0	[0..34]	[186..3329]
gi\|109077850 - gi\|109077850\|ref\|XP_001112269.1\| PREDICTED: similar to chondroitin sulfate proteoglycan 2 (versican)...	137.0	[0..34]	[186..3166]
gi\|30249 - gi\|30249\|emb\|CAA35463.1\| cartilage specific proteoglycan (600 AA) [Homo sapiens]	137.0	[0..17]	[185..368]
gi\|114599323 - gi\|114599323\|ref\|XP_001147604.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	137.0	[0..34]	[186..1828]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLTVLLIT LLVIAKTGWT REKFSIQVNE GNTFGALVKA EPFTKINDGY YFFGTESLNW  60
   61 YEAYEKCREL NSELVTFETD QEFDAVTAFL TANGSRLTYW TSGNDLAKTG SHRWFTNAQR 120
  121 ISSLRWARNQ PDNAGQKEHC IHLGYIYKDS RKFELNDRPC SQDPNSLFKY ICEAPEMETI 180
  181 SIVVWK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	2h2rA
Description:	No description for 2h2rA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits