YRC Public Data Repository - Protein Structure Prediction

Protein:	l(2)37Cg-PA
Organism:	Drosophila melanogaster
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for l(2)37Cg-PA.

Description	E-value	Query Range	Subject Range
gi\|46097891, gi\|... - gi\|71011575\|ref\|XP_758471.1\| hypothetical protein UM02324.1 [Ustilago maydis 521], ref\|XP_399939.1\| ...	130.0	[0..4]	[104..10]
rpc19 - DNA-directed RNA polymerase I and III subunit Rpc19 RPAC2_SCHPO - DNA-directed RNA polymerases I and III subunit RPAC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	127.0	[0..4]	[104..22]
gi\|73957788 - gi\|73957788\|ref\|XP_546937.2\| PREDICTED: similar to RAS p21 protein activator 4 [Canis familiaris]	127.0	[0..5]	[101..1001]
gi\|42554141, gi\|... - gi\|46125119\|ref\|XP_387113.1\| hypothetical protein FG06937.1 [Gibberella zeae PH-1], gi\|42554141\|gb\|E...	126.0	[0..6]	[102..49]
gi\|67540776, gi\|... - gi\|67540776\|ref\|XP_664162.1\| hypothetical protein AN6558.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	125.0	[0..4]	[102..35]
gi\|114615159 - gi\|114615159\|ref\|XP_527849.2\| PREDICTED: similar to RAS p21 protein activator 4, partial [Pan troglo...	122.0	[0..13]	[101..171]
gi\|50758100 - gi\|50758100\|ref\|XP_415760.1\| PREDICTED: similar to Ras GTPase-activating protein 4 (RasGAP-activatin...	122.0	[0..13]	[101..180]
gi\|70984198, gi\|... - gi\|70984198\|ref\|XP_747617.1\| DNA-directed RNA polymerase I and III 14 KDA polypeptide [Aspergillus f... gi\|159122404 - gi\|159122404\|gb\|EDP47525.1\| DNA-directed RNA polymerase I and III 14 KDA polypeptide [Aspergillus fu...	121.0	[0..4]	[104..40]
gi\|62088376 - gi\|62088376\|dbj\|BAD92635.1\| MGC13098 protein variant [Homo sapiens]	121.0	[0..5]	[91..32]
gi\|115386266, gi... - gi\|115386266\|ref\|XP_001209674.1\| hypothetical protein ATEG_06988 [Aspergillus terreus NIH2624], gi\|1...	121.0	[0..4]	[100..40]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGALAELAGD EKNGEGSRTF VFTNEGHTLG NALKTIIARY PEVDFCGYTI PHPTEQKLHF  60
   61 RIQSRRDRAI DILKRGLEDL EGLCDHTIVT FEKEMAEFNA MKVEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1i3qK
Description:	RPB11
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits