YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0308005, cni...
Organism:	Drosophila melanogaster
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0308005, cni....

Description	E-value	Query Range	Subject Range
gi\|109105438 - gi\|109105438\|ref\|XP_001118044.1\| PREDICTED: similar to cornichon homolog 2 [Macaca mulatta]	196.0	[0..15]	[143..147]
gi\|74181821 - gi\|74181821\|dbj\|BAE32615.1\| unnamed protein product [Mus musculus]	192.0	[0..1]	[144..1]
gi\|113422964 - gi\|113422964\|ref\|XP_001129488.1\| PREDICTED: similar to cornichon homolog 2 [Homo sapiens]	187.0	[0..27]	[143..201]
gi\|224051950, gi... - gi\|224051950\|ref\|XP_002200654.1\| PREDICTED: putative cornichon-like [Taeniopygia guttata], gi\|197127... gi\|73759939, gi\|... - gi\|74136747\|ref\|NP_001028178.1\| cornichon-like [Gallus gallus], gi\|73759939\|dbj\|BAE20187.1\| cornicho...	185.0	[0..1]	[144..1]
gi\|108876754, gi... - gi\|157115766\|ref\|XP_001652686.1\| cornichon protein, putative [Aedes aegypti], gi\|108876754\|gb\|EAT409...	185.0	[0..1]	[144..1]
gi\|56118470, gi\|... - gi\|89269111\|emb\|CAJ81847.1\| cornichon homolog (Drosophila) [Xenopus tropicalis], gi\|56118470\|ref\|NP_...	185.0	[0..1]	[144..1]
CNIH_PONPY - Cornichon homolog - Pongo pygmaeus (Orangutan) CNIH1_PONAB - Protein cornichon homolog 1 OS=Pongo abelii GN=CNIH1 PE=2 SV=1	184.0	[0..1]	[144..1]
gi\|13195570 - gi\|13195570\|gb\|AAK15762.1\|AF329820_1 cornichon [Boltenia villosa]	184.0	[0..1]	[143..1]
gi\|148224474, gi... - gi\|51513022\|gb\|AAH80391.1\| MGC82102 protein [Xenopus laevis], gi\|148224474\|ref\|NP_001087588.1\| MGC82...	184.0	[0..1]	[144..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNFTAFTY IVALIGDAFL IFFAIFHVIA FDELKTDYKN PIDQCNSLNP LVLPEYLLHI  60
   61 FLNLLFLFCG EWFSLCINIP LIAYHIWRYK NRPVMSGPGL YDPTTVLKTD TLYRNMREGW 120
  121 IKLAVYLISF FYYIYGMVYS LIST

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	80.619789
Match:	PF03311.5
Description:	No description for PF03311.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.825	0.058	multicellular organismal development	a.24.1	Apolipoprotein
View	Download	0.765	0.054	multicellular organismal development	a.7.7	BAG domain
View	Download	0.729	0.033	integral to membrane	f.18.1	F1F0 ATP synthase subunit A
View	Download	0.758	N/A	N/A	a.7.4	Smac/diablo
View	Download	0.653	N/A	N/A	a.29.5	alpha-ketoacid dehydrogenase kinase, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits