YRC Public Data Repository - Protein Structure Prediction

Protein:	CG16848-PA
Organism:	Drosophila melanogaster
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG16848-PA.

Description	E-value	Query Range	Subject Range
gi\|21064129 - gi\|21064129\|gb\|AAM29294.1\| AT21573p [Drosophila melanogaster]	247.0	[0..1]	[254..1]
CYSD1_MARHV - Sulfate adenylyltransferase subunit 2 1 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / ...	173.0	[0..32]	[240..8]
gi\|89083221, gi\|... - gi\|89092709\|ref\|ZP_01165662.1\| sulfate adenylate transferase, subunit 2 [Oceanospirillum sp. MED92],...	171.0	[0..31]	[240..8]
gi\|86162580, gi\|... - gi\|87122033\|ref\|ZP_01077917.1\| sulfate adenylyltransferase, subunit 2 [Marinomonas sp. MED121], gi\|8...	171.0	[0..31]	[240..5]
CYSD_VIBVU - Sulfate adenylyltransferase subunit 2 OS=Vibrio vulnificus GN=cysD PE=3 SV=1 CYSD_VIBVU - Sulfate adenylyltransferase subunit 2 OS=Vibrio vulnificus (strain CMCP6) GN=cysD PE=3 SV=1 CYSD_VIBVY - Sulfate adenylyltransferase subunit 2 OS=Vibrio vulnificus (strain YJ016) GN=cysD PE=3 SV=1	171.0	[0..29]	[240..3]
gi\|116129508, gi... - gi\|118782310\|ref\|XP_312180.3\| ENSANGP00000010849 [Anopheles gambiae str. PEST], gi\|116129508\|gb\|EAA0...	171.0	[0..44]	[241..1]
CYSD_SACD2 - Sulfate adenylyltransferase subunit 2 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17...	170.0	[0..32]	[240..7]
CYSD_ERWCT - Sulfate adenylyltransferase subunit 2 OS=Erwinia carotovora subsp. atroseptica GN=cysD PE=3 SV=1 CYSD_PECAS - Sulfate adenylyltransferase subunit 2 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-67...	170.0	[0..30]	[240..4]
gi\|89047632, gi\|... - gi\|89076712\|ref\|ZP_01162999.1\| sulfate adenylyltransferase subunit 2 [Photobacterium sp. SKA34], gi\|...	170.0	[0..30]	[240..4]
CYSD_ZYMMO - Sulfate adenylyltransferase subunit 2 OS=Zymomonas mobilis GN=cysD PE=3 SV=1 CYSD_ZYMMO - Sulfate adenylyltransferase subunit 2 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 /... gi\|241762336, gi... - gi\|241762336\|ref\|ZP_04760416.1\| sulfate adenylyltransferase, small subunit [Zymomonas mobilis subsp....	170.0	[0..28]	[240..2]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLASQFWHT VCRHYRTSRW LHIPPVEKSE SNDQLRDKLE YTEEVIKRAM TLYKPNEMML  60
   61 SFNGGKDCTV LLDILARMTP PSMPLGAVYV KSANPFEELE KFVDDCVQRY GLQLRRYEGV 120
  121 LKVAFEQLIA EDSQVKAIFL GCRRSDPESC NLYELEPTNN GWPAMMRIFP LLEWSYHDIW 180
  181 NYLRSNNLPY CCLYDQGYTS LGDRSSTRVN PSLLAYDEKL DKMTYRPAYE LENVRLERFN 240
  241 RDEHGQASVS GSKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.045757
Match:	1zunA
Description:	Crystal Structure of a GTP-Regulated ATP Sulfurylase Heterodimer from Pseudomonas syringae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.828867994386867	bayes_pls_golite062009
ligase activity	0.703115006032769	bayes_pls_golite062009
nucleic acid binding	0.266862890679237	bayes_pls_golite062009
DNA binding	0.139880087662673	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: