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View Structure Prediction Details

Protein: FBpp0309565, RpL...
Organism: Drosophila melanogaster
Length: 155 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309565, RpL....

Description E-value Query
Range
Subject
Range
gi|50729688 - gi|50729688|ref|XP_416616.1| PREDICTED: similar to Rpl24 protein [Gallus gallus]
190.0 [0..1] [155..155]
gi|76660704 - gi|76660704|ref|XP_585396.2| PREDICTED: similar to ribosomal protein L24-like [Bos taurus]
184.0 [0..1] [108..122]
gi|109032847 - gi|109032847|ref|XP_001097920.1| PREDICTED: similar to ribosomal protein L24 isoform 1 [Macaca mulat...
170.0 [0..1] [110..1]
gi|28174943 - gi|28174943|gb|AAH02110.2| Rpl24 protein [Mus musculus]
167.0 [0..1] [155..12]
RL24_ICTPU - 60S ribosomal protein L24 OS=Ictalurus punctatus GN=rpl24 PE=2 SV=1
164.0 [0..1] [155..1]
gi|61372242 - gi|61372242|gb|AAX43808.1| ribosomal protein L24 [synthetic construct]
163.0 [0..1] [155..1]
RLP24_RAT - Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus GN=Rsl24d1 PE=2 SV=1
163.0 [0..1] [146..1]
gi|15779001 - gi|15779001|gb|AAH14576.1| Ribosomal L24 domain containing 1 [Homo sapiens]
162.0 [0..1] [146..1]

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Predicted Domain #1
Region A:
Residues: [1-61]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIGLCAFSG YKIYPGHGKT MVKIDGKSFT FLDKKCERSY LMKRNPRKVT WTVLYRRKHR  60
   61 K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.39794
Match: 1ffkR
Description: Ribosomal protein L24e
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [62-155]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIEEEASKKR TRRTQKFQRA IVGASLAEIL AKRNMKPEVR KAQRDQAIKV AKEQKRAVKA  60
   61 AKKAAAPAPA KKSAPKQKAA KVTQKAAPRV GGKR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.632 a.159.2 FF domain
View Download 0.620 a.276.1 Description not found.
View Download 0.578 a.118.9 ENTH/VHS domain
View Download 0.573 a.118.9 ENTH/VHS domain
View Download 0.544 a.24.17 Group V grass pollen allergen
View Download 0.540 d.314.1 Description not found.
View Download 0.489 a.51.1 Cytochrome c oxidase subunit h
View Download 0.435 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.415 a.118.11 Cytochrome c oxidase subunit E


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle