YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0309567, CG9...
Organism:	Drosophila melanogaster
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309567, CG9....

Description	E-value	Query Range	Subject Range
gi\|38048551, gi\|... - gi\|38048551\|gb\|AAR10178.1\| similar to Drosophila melanogaster CG9306 [Drosophila yakuba], gi\|1954725...	228.0	[0..1]	[144..1]
gi\|55236086, gi\|... - gi\|58391934\|ref\|XP_318983.2\| ENSANGP00000014833 [Anopheles gambiae str. PEST], gi\|55236086\|gb\|EAA144...	212.0	[0..1]	[144..1]
gi\|157167424, gi... - gi\|157167424\|ref\|XP_001660686.1\| NADH:ubiquinone dehydrogenase, putative [Aedes aegypti], gi\|1088735...	204.0	[0..1]	[144..1]
gi\|109087441 - gi\|109087441\|ref\|XP_001100168.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcom...	198.0	[0..3]	[132..4]
NDUB9_MOUSE - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3	198.0	[0..5]	[132..6]
gi\|187469746, gi... - gi\|197245756\|gb\|AAI68767.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 [Rattus norvegicus]...	195.0	[0..5]	[132..6]
NDUB9_BOVIN - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDUFB9 PE=1 SV=2	191.0	[0..7]	[132..8]
gi\|57095338 - gi\|57095338\|ref\|XP_532326.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	189.0	[0..5]	[132..6]
gi\|4894370 - gi\|4894370\|gb\|AAD32452.1\|AF067168_1 NADH-ubiquinone oxidoreductase B22 subunit homolog [Homo sapiens...	187.0	[0..8]	[132..9]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVPLAIVS HKRQVCSLYK RALRNLESWY DRRNVYRYRA VQLRARFDEN RSKDLGEGIR  60
   61 LLACGQRELF ETRHFQPRNF ANSAGGCAFE REVIPPDWVL DYWHPLEKAQ YPEYFAKREQ 120
  121 RKKEFVTWWE KQYGKPDPKD LGHH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.337242
Match:	PF05347.3
Description:	No description for PF05347.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.660	N/A	N/A	d.112.1	Phoshotransferase/anion transport protein
View	Download	0.504	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.500	N/A	N/A	a.79.1	Antitermination factor NusB
View	Download	0.475	N/A	N/A	c.23.14	Nucleoside 2-deoxyribosyltransferase
View	Download	0.446	N/A	N/A	g.45.1	Pyk2-associated protein beta ARF-GAP domain
View	Download	0.412	N/A	N/A	a.29.5	alpha-ketoacid dehydrogenase kinase, N-terminal domain
View	Download	0.359	N/A	N/A	a.118.8	TPR-like
View	Download	0.316	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.313	N/A	N/A	d.112.1	Phoshotransferase/anion transport protein

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits