YRC Public Data Repository - Protein Structure Prediction

Protein:	CG12404-PA
Organism:	Drosophila melanogaster
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG12404-PA.

Description	E-value	Query Range	Subject Range
YIPF5_MACFA - Protein YIPF5 OS=Macaca fascicularis GN=YIPF5 PE=2 SV=1 CCDS4279.1_1 - null gi\|109079155, gi... - gi\|109079159\|ref\|XP_001098831.1\| PREDICTED: similar to smooth muscle cell associated protein 5 isofo...	256.0	[0..1]	[264..1]
gi\|114602515, gi... - gi\|114602517\|ref\|XP_518011.2\| PREDICTED: smooth muscle cell associated protein 5 isoform 3 [Pan trog... YIPF5_PONPY - Protein YIPF5 - Pongo pygmaeus (Orangutan) YIPF5 - Yip1 domain family, member 5 YIPF5_PONAB - Protein YIPF5 OS=Pongo abelii GN=YIPF5 PE=2 SV=1	255.0	[0..1]	[264..1]
gi\|115371747, gi... - gi\|116175279\|ref\|NP_001070693.1\| Yip1 domain family, member 5 [Sus scrofa], gi\|115371747\|gb\|ABI96198...	254.0	[0..1]	[264..1]
gi\|57042739 - gi\|57042739\|ref\|XP_535226.1\| PREDICTED: similar to smooth muscle cell associated protein 5 [Canis fa...	254.0	[0..1]	[264..1]
YIPF5_XENTR - Protein YIPF5 OS=Xenopus tropicalis GN=yipf5 PE=2 SV=1	248.0	[0..1]	[264..1]
YIPF5_XENLA - Protein YIPF5 OS=Xenopus laevis GN=yipf5 PE=2 SV=1	247.0	[0..1]	[264..1]
gi\|47219252 - gi\|47219252\|emb\|CAG11714.1\| unnamed protein product [Tetraodon nigroviridis]	246.0	[0..1]	[264..1]
YIPF5_DANRE - Protein YIPF5 OS=Danio rerio GN=yipf5 PE=2 SV=1	244.0	[0..1]	[264..1]

Back

Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQFGGPNDF YGSAPSADAS YNFDMPEFGQ ELNFQTFDNT QASVPPNYDA SYAQPPSQGL  60
   61 GGFYDPTAYT DTSYGQDKSG KSAAGGGAGN EFDDEPPLLE EL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [103-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GINPNHIFQK TLAVLNPLRG TDQQILQDTD MAGPLVFCLT LGGFLLLSGK VTFSYIYGIG  60
   61 VMGCIFFYCL LSLMVSRSQV TFGAVASVLG YCLLPMVVLS GINILITIQG TLGLIVSGIS 120
  121 IFWCAISASK LFATAFSMDH QQLLIAYPCA VLYGGFALIT IY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	52.49485
Match:	PF04893.8
Description:	No description for PF04893.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits