YRC Public Data Repository - Protein Structure Prediction

Protein:	CG17218-PA
Organism:	Drosophila melanogaster
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17218-PA.

Description	E-value	Query Range	Subject Range
gi\|195148204, gi... - gi\|195148204\|ref\|XP_002015064.1\| GL18618 [Drosophila persimilis], gi\|194107017\|gb\|EDW29060.1\| GL1861... gi\|54645082\|gb\|E... - GA14397-PA [Drosophila pseudoobscura], GA14397 [Drosophila pseudoobscura pseudoobscura] gi\|125985987, gi... - gi\|54645082\|gb\|EAL33822.1\| GA14397 [Drosophila pseudoobscura pseudoobscura], gi\|125985987\|ref\|XP_001...	159.0	[0..1]	[139..1]
gi\|157106474, gi... - gi\|157106474\|ref\|XP_001649340.1\| hypothetical protein AaeL_AAEL004515 [Aedes aegypti], gi\|108879860\|...	144.0	[0..3]	[145..5]
gi\|58386410, gi\|... - gi\|58386410\|ref\|XP_314738.2\| ENSANGP00000013040 [Anopheles gambiae str. PEST], gi\|55239828\|gb\|EAA102...	144.0	[0..6]	[129..66]
gi\|66518456 - gi\|66518456\|ref\|XP_393726.2\| PREDICTED: similar to CG17218-PA, isoform A [Apis mellifera]	132.0	[0..6]	[143..8]
gi\|194193391, gi... - gi\|195583141\|ref\|XP_002081382.1\| GD10986 [Drosophila simulans], gi\|194193391\|gb\|EDX06967.1\| GD10986 ... gi\|220942788 - gi\|220942788\|gb\|ACL83937.1\| CG6329-PA [synthetic construct] FBpp0308974, FBp... - This gene is referred to in FlyBase by the symbol Dmel\CG6329 (CG6329, FBgn0033872). It is a protein...	132.0	[0..4]	[148..5]
gi\|91089157 - gi\|91089157\|ref\|XP_973708.1\| PREDICTED: similar to AGAP008641-PA [Tribolium castaneum]	128.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLEKYILF AIVLCCLLQL GQAIKCWDCR SDNDPKCGDP FDNSTLAITD CQQAPELEHL  60
   61 KGVRPTMCRK IRQKVHGEWR YFRSCAYMGE PGIEGDERFC LMRTGSYNIF MEFCTCNSKD 120
  121 GCNSAGIHRL GLMGVLTGTL LSVIVAHLLR Q

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.45
Match:	1ywhA
Description:	crystal structure of urokinase plasminogen activator receptor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits