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View Structure Prediction Details

Protein: l(2)06225-PA, l(...
Organism: Drosophila melanogaster
Length: 99 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for l(2)06225-PA, l(....

Description E-value Query
Range
Subject
Range
gi|12842190, gi|... - gi|12842190|dbj|BAB25507.1| unnamed protein product [Mus musculus], gi|12841973|dbj|BAB25423.1| unna...
181.0 [0..1] [99..5]
gi|109483963, gi... - ref|XP_345983.1| similar to CG6105-PA [Rattus norvegicus], gi|109485450|ref|XP_001075306.1| PREDICTE...
174.0 [0..1] [99..24]
ATP5L_BOVIN - ATP synthase subunit g, mitochondrial OS=Bos taurus GN=ATP5L PE=1 SV=3
172.0 [0..1] [99..5]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLATKGSG LVNRLLTQAR PQLDVFLKYA KVELTPPTPA DIPAIRQGLG NIIKGAKTGA  60
   61 YKNLTVREAW LNTLVTAEVI FWFYIGECIG KRHIVGYNV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 53.823909
Match: PF04718.6
Description: No description for PF04718.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.899 N/A N/A a.7.6 Ribosomal protein S20
View Download 0.896 N/A N/A a.7.1 Spectrin repeat
View Download 0.882 N/A N/A f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.881 N/A N/A a.7.1 Spectrin repeat
View Download 0.878 N/A N/A f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.842 N/A N/A a.7.6 Ribosomal protein S20
View Download 0.824 N/A N/A a.47.5 Description not found.
View Download 0.818 N/A N/A a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.791 N/A N/A a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.737 N/A N/A a.51.1 Cytochrome c oxidase subunit h


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle