YRC Public Data Repository - Protein Structure Prediction

Protein:	CG17124-PB, CG17...
Organism:	Drosophila melanogaster
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17124-PB, CG17....

Description	E-value	Query Range	Subject Range
gi\|30175489, gi\|... - gi\|58471991\|ref\|XP_317606.2\| ENSANGP00000022851 [Anopheles gambiae str. PEST], gi\|55237820\|gb\|EAA439... AGAP007886-PD, A... - \|protein_coding\|3R:2472738:2474568:-1\|gene:AGAP007886, \|protein_coding\|3R:2472738:2474568:-1\|gene:AG...	164.0	[0..1]	[124..1]
gi\|157113885, gi... - gi\|157113885\|ref\|XP_001652134.1\| hypothetical protein AaeL_AAEL006619 [Aedes aegypti], gi\|108877572\|...	163.0	[0..1]	[124..1]
gi\|194103464, gi... - gi\|195161627\|ref\|XP_002021664.1\| GL26388 [Drosophila persimilis], gi\|194103464\|gb\|EDW25507.1\| GL2638... gi\|54644380, gi\|... - gi\|54644380\|gb\|EAL33121.1\| GA14336 [Drosophila pseudoobscura pseudoobscura], gi\|125984596\|ref\|XP_001... gi\|125984596\|ref... - GA14336-PA [Drosophila pseudoobscura], GA14336 [Drosophila pseudoobscura pseudoobscura]	157.0	[0..1]	[124..1]
gi\|73390140, gi\|... - gi\|73390140\|ref\|NP_001026971.1\| LIM domain kinase 2 isoform 1 [Homo sapiens], gi\|15341774\|gb\|AAH1305...	148.0	[0..11]	[124..563]
gi\|61370248, gi\|... - gi\|61370248\|gb\|AAX43462.1\| LIM domain kinase 2 [synthetic construct], gi\|61370243\|gb\|AAX43461.1\| LIM...	148.0	[0..11]	[124..563]
gi\|109730881, gi... - gi\|148682450\|gb\|EDL14397.1\| mCG7896 [Mus musculus], gi\|145587107\|ref\|NP_080022.2\| hypothetical prote...	137.0	[0..14]	[124..36]
gi\|51980674, gi\|... - gi\|62078641\|ref\|NP_001013978.1\| hypothetical protein LOC301306 [Rattus norvegicus], gi\|51980674\|gb\|A...	129.0	[0..13]	[124..28]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQCGLEQMND CERSPNRTNL RVNFNEKGAE VKERREKFLT AKYGSHQMSL IRKRLAVEMW  60
   61 LYDELQKLFD PPNEAIDVDI DEILDMDTDD IRRSHLIRLL SVCKRPQSDI SKFIGDLLDR 120
  121 AKTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.221849
Match:	1j2mA
Description:	Myosin phosphatase inhibitor 17kDa protein, CPI-17
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits