YRC Public Data Repository - Protein Structure Prediction

Protein:	CG6750-PA
Organism:	Drosophila melanogaster
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG6750-PA.

Description	E-value	Query Range	Subject Range
gi\|157113883, gi... - gi\|157113883\|ref\|XP_001652133.1\| hypothetical protein AaeL_AAEL006611 [Aedes aegypti], gi\|108877571\|...	379.0	[0..1]	[244..1]
gi\|119112432, gi... - gi\|119112432\|ref\|XP_317608.3\| AGAP007885-PA [Anopheles gambiae str. PEST], gi\|116123350\|gb\|EAA12888.... AGAP007885-PA - \|protein_coding\|3R:2468325:2469195:1\|gene:AGAP007885	377.0	[0..1]	[238..1]
gi\|47213595 - gi\|47213595\|emb\|CAG07261.1\| unnamed protein product [Tetraodon nigroviridis]	374.0	[0..3]	[238..5]
gi\|58000444, gi\|... - gi\|58000444\|ref\|NP_001009987.1\| hypothetical protein LOC494496 [Danio rerio], gi\|56789523\|gb\|AAH8838...	374.0	[0..3]	[239..5]
EMC3_RAT - ER membrane protein complex subunit 3 OS=Rattus norvegicus GN=Emc3 PE=2 SV=3 EMC3_MOUSE - ER membrane protein complex subunit 3 OS=Mus musculus GN=Emc3 PE=1 SV=3	373.0	[0..3]	[239..5]
ENSCJAT00000031683 - null gi\|55619789 - gi\|55619789\|ref\|XP_516272.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] TM111_PONPY - Transmembrane protein 111 - Pongo pygmaeus (Orangutan) tr\|M3WUY6\|M3WUY6... - ER membrane protein complex subunit 3 OS=Felis catus GN=EMC3 PE=3 SV=1 gi\|149728297 - gi\|149728297\|ref\|XP_001494113.1\| PREDICTED: similar to Transmembrane protein 111 [Equus caballus] EMC3_PONAB - ER membrane protein complex subunit 3 OS=Pongo abelii GN=EMC3 PE=2 SV=3 TMEM111 - transmembrane protein 111 gi\|57100904 - gi\|57100904\|ref\|XP_533744.1\| PREDICTED: similar to 30 kDa protein isoform 1 [Canis familiaris]	373.0	[0..3]	[239..5]
gi\|54644377, gi\|... - gi\|54644377\|gb\|EAL33118.1\| GA19832-PA [Drosophila pseudoobscura], gi\|125984590\|ref\|XP_001356059.1\| G...	373.0	[0..1]	[242..1]
EMC3_BOVIN - ER membrane protein complex subunit 3 OS=Bos taurus GN=EMC3 PE=2 SV=3	372.0	[0..3]	[239..5]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELLIDPDI RVWVFLPIVL ITFLVGIVRH YVSILISTQK KAEITQIQDS QAMIRARLLR  60
   61 ENGKYLSAQS FSMRKNYFNN EETGYFKTQK RAPVAQNSSA MLTDMVKGNF INVLPMVVIG 120
  121 GWINWMFSGF VTTKVPFPLT LRFKPMLQRG VELASLDAAW VSSASWYFLN VFGLRSIYTL 180
  181 VL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [183-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GENNHADQTQ AQADAMTGAA MTMPQDPKAA FKAEWEALEI TEYHNALKNI DADMLAIASA  60
   61 PAASS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.838	N/A	N/A	a.159.2	FF domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits