YRC Public Data Repository - Protein Structure Prediction

Protein:	CG17118-PA
Organism:	Drosophila melanogaster
Length:	281 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17118-PA.

Description	E-value	Query Range	Subject Range
gi\|28317259 - gi\|28317259\|gb\|AAL68150.2\| AT30334p [Drosophila melanogaster]	399.0	[0..1]	[281..13]
gi\|1655637, gi\|6... - gi\|6680127\|ref\|NP_032213.1\| gene trap locus 3 [Mus musculus], gi\|1655637\|emb\|CAA90889.1\| orf [Mus mu...	344.0	[0..1]	[192..1]
AGAP009680-PA - \|protein_coding\|3R:38394804:38396210:1\|gene:AGAP009680 gi\|108870394, gi... - gi\|157134658\|ref\|XP_001663334.1\| transcription factor IIB, putative [Aedes aegypti], gi\|108870394\|gb... gi\|158298556, gi... - gi\|158298556\|ref\|XP_318737.3\| AGAP009680-PA [Anopheles gambiae str. PEST], gi\|157013940\|gb\|EAA14543....	344.0	[0..1]	[191..1]
gi\|48104652 - gi\|48104652\|ref\|XP_395824.1\| PREDICTED: similar to transcription factor IIB [Apis mellifera]	344.0	[0..1]	[192..1]
CFA20_MOUSE - Cilia- and flagella-associated protein 20 OS=Mus musculus GN=Cfap20 PE=1 SV=1 tr\|M3WMG3\|M3WMG3... - Cilia and flagella associated protein 20 OS=Felis catus GN=CFAP20 PE=4 SV=1 gi\|149032393 - gi\|149032393\|gb\|EDL87284.1\| rCG39041, isoform CRA_a [Rattus norvegicus] CFA20_BOVIN - Cilia- and flagella-associated protein 20 OS=Bos taurus GN=CFAP20 PE=2 SV=1 gi\|149699186 - gi\|149699186\|ref\|XP_001494857.1\| PREDICTED: similar to UPF0468 protein C16orf80 homolog (Gene trap l... gi\|73950333 - gi\|73950333\|ref\|XP_544382.2\| PREDICTED: similar to transcription factor IIB [Canis familiaris] tr\|G1T6K5\|G1T6K5... - Uncharacterized protein OS=Oryctolagus cuniculus GN=CFAP20 PE=4 SV=2	344.0	[0..1]	[192..1]
CFA20_CHICK - Cilia- and flagella-associated protein 20 OS=Gallus gallus GN=CFAP20 PE=2 SV=1	344.0	[0..1]	[192..1]
gi\|58391621, gi\|... - gi\|58391621\|ref\|XP_318737.2\| ENSANGP00000016579 [Anopheles gambiae str. PEST], gi\|55235859\|gb\|EAA145...	344.0	[0..1]	[191..1]
gi\|167773773, gi... - gi\|208966016\|dbj\|BAG73022.1\| chromosome 16 open reading frame 80 [synthetic construct], gi\|167773773... CCDS10793.1_1 - null gi\|55643953 - gi\|55643953\|ref\|XP_511001.1\| PREDICTED: transcription factor IIB isoform 2 [Pan troglodytes] C16orf80 - chromosome 16 open reading frame 80 gi\|109128715 - gi\|109128715\|ref\|XP_001101318.1\| PREDICTED: similar to transcription factor IIB [Macaca mulatta] ENSCJAT00000022706 - null	343.0	[0..1]	[192..1]
CFA20_DANRE - Cilia- and flagella-associated protein 20 OS=Danio rerio GN=cfap20 PE=2 SV=1	343.0	[0..1]	[192..1]
tr\|A0A0R4IVH3\|A0... - Isoform of Q6PBJ2, Cilia- and flagella-associated protein 20 OS=Danio rerio GN=cfap20 PE=1 SV=1 CFA20_XENTR - Cilia- and flagella-associated protein 20 OS=Xenopus tropicalis GN=cfap20 PE=2 SV=1 CFA20_XENLA - Cilia- and flagella-associated protein 20 OS=Xenopus laevis GN=cfap20 PE=2 SV=1	343.0	[0..1]	[192..1]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRAAYQKGF LTVLYSVGSS PLNNWSSYTK NGYIKRIYDE DIKSLVLEIM GSNVSTTFIH  60
   61 CPSECKEQLG IKLPFLV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	11.013228
Match:	PF05018.4
Description:	No description for PF05018.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLIKNMHKYF CFEVKIQDDQ RFMRRFRVSN FQSKTSVKPF CTAMPMGMSP GWNQIQFNLA  60
   61 DFTRRAYGSN YLETVSLQLH ANVRIRRIYF ADKLYTEAEL PNDYRLMGKP KDLKKPEKQF 120
  121 KVQATARPPS PLNTGRGEPG PSKDTDAEAT GPATDPMSEP EPALQKSPSP PVPQKVPSPA 180
  181 ASAPPEPATE EPAPQTEATE EAYY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.02
Match:	1q1qA
Description:	Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits