YRC Public Data Repository - Protein Structure Prediction

Protein:	CG6094-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG6094-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|56421641, gi\|... - gi\|56421641\|ref\|YP_148959.1\| peptide chain release factor 2 in translation [Geobacillus kaustophilus...	236.0	[0..8]	[203..131]
gi\|56964831, gi\|... - gi\|56964831\|ref\|YP_176562.1\| peptide chain release factor 2 [Bacillus clausii KSM-K16], gi\|56911074\|...	230.0	[0..8]	[202..131]
gi\|94427879, gi\|... - gi\|94500021\|ref\|ZP_01306556.1\| peptide chain release factor 1 [Oceanobacter sp. RED65], gi\|94427879\|...	228.0	[0..7]	[203..155]
RF1_BORBR - Peptide chain release factor 1 OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50... RF1_BORPE - Peptide chain release factor 1 OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)... RF1_BORBR - Peptide chain release factor 1 OS=Bordetella bronchiseptica GN=prfA PE=3 SV=1 RF1_BORPE - Peptide chain release factor 1 OS=Bordetella pertussis GN=prfA PE=3 SV=1	228.0	[0..5]	[203..151]
RF1_METCA - Peptide chain release factor 1 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) ... RF1_METCA - Peptide chain release factor 1 OS=Methylococcus capsulatus GN=prfA PE=3 SV=1	228.0	[0..5]	[203..153]
gi\|88777011, gi\|... - gi\|88800296\|ref\|ZP_01115863.1\| peptide chain release factor 1 [Reinekea sp. MED297], gi\|88777011\|gb\|...	228.0	[0..6]	[203..154]
RF1_CUPPJ - Peptide chain release factor 1 OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=prfA PE=...	227.0	[0..5]	[203..151]
RF1_PSEF5 - Peptide chain release factor 1 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=prfA PE=3 ...	227.0	[0..5]	[203..153]
RF1_PSEE4 - Peptide chain release factor 1 OS=Pseudomonas entomophila (strain L48) GN=prfA PE=3 SV=1 gi\|95109087 - gi\|95109087\|emb\|CAK13784.1\| peptide chain release factor 1 [Pseudomonas entomophila L48]	227.0	[0..5]	[203..153]
RF1_BORPA - Peptide chain release factor 1 OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253... RF1_BORPA - Peptide chain release factor 1 OS=Bordetella parapertussis GN=prfA PE=3 SV=1	227.0	[0..5]	[203..151]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKITSAFIR VLRQSSSSGG TGNLLGRQLS YKSDLSLDKI YPGARLQIYT PPPPPSGSDK  60
   61 FSGFIPMDRL EITYSRSSGP GGQHVNTVNT KVDVRFKVAQ ADWIPEQTRQ KLLKVLANRI 120
  121 TKDGYFYIKS DLTRSQQMNL ADALEKLRTI IRSQEAVAPA PPSEETLEKL RRRQERAVRE 180
  181 RLQLKRGRAQ VKADRQGPSG LDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.0
Match:	2b3tB
Description:	Molecular basis for bacterial class 1 release factor methylation by PrmC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.72500611461832	bayes_pls_golite062009
nucleic acid binding	1.33510710518321	bayes_pls_golite062009
translation regulator activity	1.23360033083197	bayes_pls_golite062009
translation factor activity, nucleic acid binding	1.23313210840115	bayes_pls_golite062009
translation termination factor activity	1.224889505882	bayes_pls_golite062009
translation release factor activity	1.22486339070595	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: