YRC Public Data Repository - Protein Structure Prediction

Protein:	lft-PA, lft-PB
Organism:	Drosophila melanogaster
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lft-PA, lft-PB.

Description	E-value	Query Range	Subject Range
gi\|55235335, gi\|... - gi\|58392994\|ref\|XP_319761.2\| ENSANGP00000017194 [Anopheles gambiae str. PEST], gi\|55235335\|gb\|EAA148...	521.0	[0..1]	[263..1]
gi\|157124217, gi... - gi\|157124217\|ref\|XP_001660369.1\| hypothetical protein AaeL_AAEL001809 [Aedes aegypti], gi\|108882804\|...	517.0	[0..1]	[263..2]
LIX1 - Lix1 homolog (chicken)	498.0	[0..10]	[268..15]
gi\|114600941 - gi\|114600941\|ref\|XP_526965.2\| PREDICTED: hypothetical protein [Pan troglodytes]	495.0	[0..10]	[268..15]
gi\|109078075 - gi\|109078075\|ref\|XP_001095680.1\| PREDICTED: similar to limb expression 1 [Macaca mulatta]	495.0	[0..25]	[268..28]
gi\|114326431, gi... - gi\|82469913\|gb\|ABB77208.1\| limb expression 1 [Felis catus], gi\|114326431\|ref\|NP_001041627.1\| limb ex...	494.0	[0..10]	[268..15]
gi\|73952265 - gi\|73952265\|ref\|XP_546011.2\| PREDICTED: similar to limb expression 1 [Canis familiaris]	493.0	[0..10]	[268..15]
LIX1_CHICK - Protein limb expression 1 OS=Gallus gallus GN=LIX1 PE=2 SV=1	480.0	[0..10]	[268..15]
gi\|119895929, gi... - gi\|76623912\|ref\|XP_870168.1\| PREDICTED: similar to limb expression 1 isoform 3 [Bos taurus], gi\|1198...	480.0	[0..10]	[268..15]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYPEEPFWV LPTVTGFYED RDYRVNVVEA LQEFWQMKQS RGAELKNGAL VIYESIPSNS  60
   61 QPYICFVTLP GGSCFGSFQN CPTKAEARRS SAKIALMNSV FNEHPSRRIS DEFIQKAVQD 120
  121 ARTSFKGTSQ INEGT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [136-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESGIGAFRFM LEANKGRTML EFQELMTVFQ LLHWNGSLKA MRERHCSRQE VVAHYSNRSL  60
   61 DDEMRSQMAL DWIAREHDNP GVIRRELVLA ERELETFRMA GRELRFPKEK KDILMIAHNQ 120
  121 LGGSALNSAT IDD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits