YRC Public Data Repository - Protein Structure Prediction

Protein:	CG5885-PA
Organism:	Drosophila melanogaster
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG5885-PA.

Description	E-value	Query Range	Subject Range
gi\|125985147\|ref... - GA19202-PA [Drosophila pseudoobscura], GA19202 [Drosophila pseudoobscura pseudoobscura] gi\|195146974, gi... - gi\|195146974\|ref\|XP_002014458.1\| GL19200 [Drosophila persimilis], gi\|194106411\|gb\|EDW28454.1\| GL1920... gi\|125985147, gi... - gi\|54644660\|gb\|EAL33400.1\| GA19202 [Drosophila pseudoobscura pseudoobscura], gi\|125985147\|ref\|XP_001...	313.0	[0..1]	[190..1]
gi\|38048305 - gi\|38048305\|gb\|AAR10055.1\| similar to Drosophila melanogaster CG5885 [Drosophila yakuba]	303.0	[0..1]	[180..1]
gi\|148235194, gi... - gi\|27735441\|gb\|AAH41301.1\| MGC53595 protein [Xenopus laevis], gi\|148235194\|ref\|NP_001080316.1\| hypot...	302.0	[0..2]	[188..5]
gi\|89266766, gi\|... - gi\|89266766\|emb\|CAJ81804.1\| signal sequence receptor, gamma (translocon-associated protein gamma) [X...	302.0	[0..2]	[188..5]
gi\|50752556 - gi\|50752556\|ref\|XP_422829.1\| PREDICTED: hypothetical protein [Gallus gallus]	298.0	[0..14]	[188..11]
SSRG_BOVIN - Translocon-associated protein subunit gamma OS=Bos taurus GN=SSR3 PE=2 SV=1	297.0	[0..2]	[188..5]
SSRG_PONAB - Translocon-associated protein subunit gamma OS=Pongo abelii GN=SSR3 PE=2 SV=1 SSRG_PONPY - Translocon-associated protein subunit gamma - Pongo pygmaeus (Orangutan)	297.0	[0..11]	[188..6]
gi\|220673371, gi... - gi\|58801520\|ref\|NP_956347.1\| signal sequence receptor, gamma [Danio rerio], gi\|29126995\|gb\|AAH47859....	297.0	[0..11]	[188..6]
SSRG_MOUSE - Translocon-associated protein subunit gamma OS=Mus musculus GN=Ssr3 PE=1 SV=1 gi\|73990466 - gi\|73990466\|ref\|XP_534317.2\| PREDICTED: similar to signal sequence receptor, gamma isoform 1 [Canis ... SSRG_RAT - Translocon-associated protein subunit gamma OS=Rattus norvegicus GN=Ssr3 PE=1 SV=2 tr\|M3X2V2\|M3X2V2... - Signal sequence receptor subunit 3 OS=Felis catus GN=SSR3 PE=4 SV=1	297.0	[0..2]	[188..5]
CCDS3176.1_1 - null SSR3 - signal sequence receptor, gamma (translocon-associated protein gamma) gi\|90075752 - gi\|90075752\|dbj\|BAE87556.1\| unnamed protein product [Macaca fascicularis] gi\|61362748, gi\|... - gi\|61362755\|gb\|AAX42275.1\| signal sequence receptor gamma [synthetic construct], gi\|61362748\|gb\|AAX4... gi\|109048616 - gi\|109048616\|ref\|XP_001104823.1\| PREDICTED: similar to signal sequence receptor gamma subunit isofor... gi\|55621362 - gi\|55621362\|ref\|XP_516834.1\| PREDICTED: signal sequence receptor gamma subunit [Pan troglodytes]	296.0	[0..11]	[188..6]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSGKQQKVQ SSGFTKEEEL LLQDFSRNVS TKSSALFYGN AFIVSAVPIW LFWRIHNMDL  60
   61 WPSSILFVLV TAASTYLMAT AYKNIKFQLK HKIAGRREEA VTREVNRQVG DDKKVTRKEK 120
  121 DERILWKKNE VADYEATTFS IFYNNAIYLA VIIFISFFIL KNSTPFINYI FSVGIASGAL 180
  181 SLFSTSAQTN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	135.207608
Match:	PF07074.3
Description:	No description for PF07074.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits