YRC Public Data Repository - Protein Structure Prediction

Protein:	Cks30A-PA
Organism:	Drosophila melanogaster
Length:	74 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cks30A-PA.

Description	E-value	Query Range	Subject Range
gi\|154343611\|ref... - cyclin-dependent kinase regulatory subunit [Leishmania braziliensis MHOM/BR/75/M2904] gi\|146097182 - gi\|146097182\|ref\|XP_001468066.1\| cyclin-dependent kinase regulatory subunit [Leishmania infantum JPC... gi\|134065083, gi... - gi\|154343611\|ref\|XP_001567751.1\| cyclin-dependent kinase regulatory subunit [Leishmania braziliensis... gi\|134072432 - gi\|134072432\|emb\|CAM71142.1\| cyclin-dependent kinase regulatory subunit [Leishmania infantum] gi\|68128777 - gi\|68128777\|emb\|CAJ08910.1\| cyclin-dependent kinase regulatory subunit [Leishmania major] gi\|157874443 - gi\|157874443\|ref\|XP_001685705.1\| cyclin-dependent kinase regulatory subunit [Leishmania major]	137.0	[0..1]	[73..27]
CKS1_LEIME - Cyclin-dependent kinases regulatory subunit OS=Leishmania mexicana PE=3 SV=1	137.0	[0..1]	[73..27]
gi\|109505505 - gi\|109505505\|ref\|XP_001054024.1\| PREDICTED: similar to CDC28 protein kinase regulatory subunit 2 [Ra...	137.0	[0..3]	[71..102]
gi\|108879113, gi... - gi\|157109134\|ref\|XP_001650539.1\| cyclin-dependent kinases regulatory subunit. putative [Aedes aegypt...	136.0	[0..2]	[74..3]
AGAP009442-PA - cyclin-dependent kinase regulatory subunit CKS1\|protein_coding\|3R:33502440:33502844:1\|gene:AGAP00944... gi\|118777340, gi... - gi\|118777340\|ref\|XP_307855.3\| AGAP009442-PA [Anopheles gambiae str. PEST], gi\|116132904\|gb\|EAA03636....	133.0	[0..3]	[73..4]
CKS1_CAEBR - Cyclin-dependent kinases regulatory subunit OS=Caenorhabditis briggsae GN=cks-1 PE=3 SV=1 gi\|157772581 - gi\|157772581\|ref\|XP_001664355.1\| hypothetical protein CBG15632 [Caenorhabditis briggsae AF16]	132.0	[0..2]	[71..5]
gi\|114051550, gi... - gi\|87248089\|gb\|ABD36097.1\| cyclin-dependent kinase regulatory subunit [Bombyx mori], gi\|114051550\|re...	132.0	[0..3]	[74..4]
gi\|66534763 - gi\|66534763\|ref\|XP_624975.1\| PREDICTED: similar to Cyclin-dependent kinase subunit 85A CG9790-PA [Ap...	132.0	[0..2]	[74..3]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDIYYSDK YYDEQFEYRH VVLPKELVKM VPKTHLMTEA EWRSIGVQQS RGWIHYMIHK  60
   61 PEPHILLFRR PKTD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	1buhB
Description:	CksHs1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits