YRC Public Data Repository - Protein Structure Prediction

Protein:	Trs23-PA
Organism:	Drosophila melanogaster
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Trs23-PA.

Description	E-value	Query Range	Subject Range
TPPC4_MOUSE - Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1	300.0	[0..1]	[213..1]
gi\|71051670, gi\|... - gi\|71051670\|gb\|AAH98628.1\| Trafficking protein particle complex 4 [Rattus norvegicus], gi\|62653423\|r... tr\|G3I977\|G3I977... - Trafficking protein particle complex subunit 4 OS=Cricetulus griseus GN=H671_4g12993 PE=4 SV=1	299.0	[0..1]	[213..1]
gi\|55637071 - gi\|55637071\|ref\|XP_508802.1\| PREDICTED: similar to Trafficking protein particle complex subunit 4 (S... TPPC4_PONPY - Trafficking protein particle complex subunit 4 - Pongo pygmaeus (Orangutan) TPPC4_PONAB - Trafficking protein particle complex subunit 4 OS=Pongo abelii GN=TRAPPC4 PE=2 SV=1 TRAPPC4 - trafficking protein particle complex 4	295.0	[0..1]	[213..1]
tr\|M3VW28\|M3VW28... - Trafficking protein particle complex 4 OS=Felis catus GN=TRAPPC4 PE=4 SV=1 gi\|149716953 - gi\|149716953\|ref\|XP_001503119.1\| PREDICTED: similar to Trafficking protein particle complex 4 [Equus... TPPC4_BOVIN - Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1	294.0	[0..1]	[213..1]
gi\|73954670 - gi\|73954670\|ref\|XP_536548.2\| PREDICTED: similar to Trafficking protein particle complex subunit 4 (S...	290.0	[0..1]	[213..1]
gi\|37748039, gi\|... - gi\|41152142\|ref\|NP_957058.1\| trafficking protein particle complex 4 [Danio rerio], gi\|37748039\|gb\|AA...	285.0	[0..1]	[213..1]
gi\|77748155, gi\|... - gi\|77748155\|gb\|AAI06501.1\| MGC131237 protein [Xenopus laevis], gi\|148223700\|ref\|NP_001090112.1\| hypo...	284.0	[0..1]	[213..1]
AGAP008106-PA - Trafficking protein particle complex subunit 4\|protein_coding\|3R:5810307:5811027:-1\|gene:AGAP008106 gi\|21300340, gi\|... - gi\|31223771\|ref\|XP_317351.1\| AGAP008106-PA [Anopheles gambiae str. PEST], gi\|21300340\|gb\|EAA12485.1\|...	278.0	[0..1]	[217..1]

Back

Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIYGVYIVS KSGGLIFNLD NNVPRIEHEK TFTYPLDLVL DYDSKKVSVS FNRKDGINVG  60
   61 HVLVAVNGMP VNGVTLDDGR DVRTTLDAPE NYPINLKFSR PKMTTNEKIF LASMFYPLFA 120
  121 IASQLSPEPK SSGIEILEAD TFTLHCFQTL TGIKFIIISE TGLNGIDLLL RKVYELYSDY 180
  181 VLKNPFYSLE MPIRCELFDN KLQELLAQVE KTGISNIDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.30103
Match:	2j3tD
Description:	No description for 2j3tD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits