YRC Public Data Repository - Protein Structure Prediction

Protein:	Ssb-c31a-PA
Organism:	Drosophila melanogaster
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ssb-c31a-PA.

Description	E-value	Query Range	Subject Range
gi\|73954359 - gi\|73954359\|ref\|XP_536425.2\| PREDICTED: similar to Activated RNA polymerase II transcriptional coact...	136.0	[0..1]	[109..192]
gi\|145018284, gi... - gi\|39974147\|ref\|XP_368464.1\| predicted protein [Magnaporthe grisea 70-15], gb\|EAA49122.1\| hypothetic...	119.0	[0..2]	[109..3]
KIWI_ARATH - RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1	118.0	[0..5]	[110..6]
gi\|16610191 - gi\|16610191\|emb\|CAD10638.1\| PBF68 protein [Nicotiana tabacum]	117.0	[0..13]	[108..91]
TCP4_NEUCR - Putative RNA polymerase II transcriptional coactivator OS=Neurospora crassa GN=80A10.210 PE=3 SV=1 TCP4_NEUCR - Putative RNA polymerase II transcriptional coactivator OS=Neurospora crassa (strain ATCC 24698 / 74-...	113.0	[0..2]	[109..3]
gi\|114600763 - gi\|114600763\|ref\|XP_001154452.1\| PREDICTED: similar to SUB1 homolog (S. cerevisiae) isoform 2 [Pan t...	111.0	[0..1]	[109..27]
gi\|109076878 - gi\|109076878\|ref\|XP_001089347.1\| PREDICTED: similar to Activated RNA polymerase II transcriptional c...	110.0	[0..1]	[109..42]
gi\|50725768, gi\|... - gi\|50909391\|ref\|XP_466184.1\| transcriptional coactivator p15 (PC4) family protein-like [Oryza sativa... gi\|125539866 - gi\|125539866\|gb\|EAY86261.1\| hypothetical protein OsI_07632 [Oryza sativa Indica Group]	105.0	[0..28]	[110..17]

Back

Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKTKKKDSS SDSDSGPDDR IKPASKKAKE SDAPNSDPKD SGENGATSWT LEGLRQVRIN  60
   61 EFRGRKSVDI REFYDKGGQI LPGKKGISLS LIQWKKLLEV AEEVTRAIEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.09691
Match:	1pcfA
Description:	Transcriptional coactivator PC4 C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits