YRC Public Data Repository - Protein Structure Prediction

Protein:	CG5958-PA
Organism:	Drosophila melanogaster
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG5958-PA.

Description	E-value	Query Range	Subject Range
gi\|41052607, gi\|... - gi\|50905075\|ref\|XP_464026.1\| putative hosphatidylinositol/phophatidylcholine transfer protein [Oryza... gi\|125537970 - gi\|125537970\|gb\|EAY84365.1\| hypothetical protein OsI_05740 [Oryza sativa Indica Group]	280.0	[0..1]	[293..48]
gi\|22137166, gi\|... - gi\|22137166\|gb\|AAM91428.1\| AT4g39170/T22F8_70 [Arabidopsis thaliana], gi\|14335006\|gb\|AAK59767.1\| AT4...	277.0	[0..1]	[292..48]
gi\|92879194 - gi\|92879194\|gb\|ABE85412.1\| Cellular retinaldehyde-binding/triple function, N-terminal [Medicago trun...	277.0	[0..4]	[292..48]
gi\|14486705 - gi\|14486705\|gb\|AAK63247.1\|AF367433_1 phosphatidylinositol transfer-like protein III [Lotus japonicus...	276.0	[0..1]	[291..48]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATDIAEEA FHLRLGYLKP ETVEIARVEL RETEEVKAEA IIKLRELLKA TPELNYKDDD  60
   61 AFLTVFLRAC HFYPEGALEK MKTTASFRKE YASLVRGLLV EQVKEKFVKG SVINVLKNCD 120
  121 QKGRRVLIVN CGKLWDPSDI TSDEMFRMLY MVHLAAQLEE ETQVRGVVCI MDFEGLSMKQ 180
  181 VKALSPSFSK RLLTFIQEAM PLRMKEVHFV KQPFIFNMVW SLFKPFVKQK LNNRMHFHGS 240
  241 DMKSLQKFLD PSVLPANYKG TLPAIDYGGV EWFPALEQQA QYVEEWSQLG PAQW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.30103
Match:	1oipA
Description:	The Molecular Basis of Vitamin E Retention: Structure of Human Alpha-Tocopherol Transfer Protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits