YRC Public Data Repository - Protein Structure Prediction

Protein:	CG5171-PB, CG517...
Organism:	Drosophila melanogaster
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG5171-PB, CG517....

Description	E-value	Query Range	Subject Range
gi\|58389736, gi\|... - gi\|58389736\|ref\|XP_317243.2\| ENSANGP00000021902 [Anopheles gambiae str. PEST], gi\|55237461\|gb\|EAA124...	183.0	[0..13]	[271..510]
gi\|157113405, gi... - gi\|157113405\|ref\|XP_001657813.1\| trehalose-6-phosphate synthase [Aedes aegypti], gi\|108877743\|gb\|EAT...	182.0	[0..13]	[271..511]
Tps1-PA - The gene Trehalose-6-phosphate synthase 1 is referred to in FlyBase by the symbol Dmel\Tps1 (CG4104,...	182.0	[0..12]	[271..513]
gi\|195159548, gi... - gi\|195159548\|ref\|XP_002020640.1\| GL15110 [Drosophila persimilis], gi\|194117590\|gb\|EDW39633.1\| GL1511... gi\|125986449, gi... - gi\|54645314\|gb\|EAL34054.1\| GA17960 [Drosophila pseudoobscura pseudoobscura], gi\|125986449\|ref\|XP_001... gi\|54645314\|gb\|E... - GA17960-PA [Drosophila pseudoobscura], GA17960 [Drosophila pseudoobscura pseudoobscura]	180.0	[0..12]	[271..513]
gi\|91080483 - gi\|91080483\|ref\|XP_966321.1\| PREDICTED: similar to CG4104-PA isoform 1 [Tribolium castaneum]	179.0	[0..8]	[270..501]
gi\|49648691 - gi\|49648691\|emb\|CAG81011.1\| YALI0D14476p [Yarrowia lipolytica] gi\|49648691, gi\|... - gi\|50550701\|ref\|XP_502823.1\| YALI0D14476p [Yarrowia lipolytica], gi\|49648691\|emb\|CAG81011.1\| unnamed...	176.0	[0..3]	[269..517]
gi\|110737795 - gi\|110737795\|dbj\|BAF00836.1\| putative trehalose-6-phosphate synthase [Arabidopsis thaliana]	173.0	[0..8]	[270..8]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEKQVAPVI SNLEDFANNL PGYLISESPV AVLLDYDGTL APIADNPAKT KMPVELEAIL  60
   61 HKIAKHPKVF LAVISGRGLK DVQKQVNIDG ITYAGNHGLE IEYPDGSRHD YELPTEIQKN 120
  121 YTQMVRELKE KVEKNGAWVE DKKVSLTYHY RDTPAALKDQ QKQLASEICT KFGFRANQAH 180
  181 EAIEAKPPVN WNKGEAAVYI LKQKFGDNWS QKVSVVFAGD DTTDEDAMRV LRGLGRSFRI 240
  241 SADAQIQTYA DFRLPKQAVM TDLLKWIANV YVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1rkqA
Description:	Crystal structure of NYSGRC target T1436: A Hypothetical protein yidA.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.92340854382984	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: