YRC Public Data Repository - Protein Structure Prediction

Protein:	CG13779-PA
Organism:	Drosophila melanogaster
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG13779-PA.

Description	E-value	Query Range	Subject Range
gi\|42550616, gi\|... - gi\|46116298\|ref\|XP_384167.1\| hypothetical protein FG03991.1 [Gibberella zeae PH-1], gi\|42550616\|gb\|E...	106.0	[0..1]	[69..1]
gi\|194117848, gi... - gi\|195160068\|ref\|XP_002020898.1\| GL14107 [Drosophila persimilis], gi\|194117848\|gb\|EDW39891.1\| GL1410... gi\|125986752\|ref... - GA12520-PA [Drosophila pseudoobscura], GA12520 [Drosophila pseudoobscura pseudoobscura] gi\|54645466, gi\|... - gi\|54645466\|gb\|EAL34205.1\| GA12520 [Drosophila pseudoobscura pseudoobscura], gi\|125986752\|ref\|XP_001...	62.0	[0..1]	[79..1]
gi\|114599354 - gi\|114599354\|ref\|XP_001149101.1\| PREDICTED: hypothetical protein [Pan troglodytes]	50.0	[0..15]	[67..3]
gi\|114197171, gi... - gi\|115491367\|ref\|XP_001210311.1\| predicted protein [Aspergillus terreus NIH2624], gi\|114197171\|gb\|EA...	47.0	[0..24]	[69..22]
gi\|73975821 - gi\|73975821\|ref\|XP_861304.1\| PREDICTED: similar to 26 proteasome complex subunit DSS1 (Deleted in sp...	47.0	[0..15]	[70..3]
SEM1_NEUCR - Putative 26S proteasome complex subunit sem-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /... SEM1_NEUCR - Putative 26S proteasome complex subunit sem-1 OS=Neurospora crassa GN=sem-1 PE=3 SV=1	46.0	[0..5]	[73..9]
gi\|169608137, gi... - gi\|169608137\|ref\|XP_001797488.1\| hypothetical protein SNOG_07135 [Phaeosphaeria nodorum SN15], gi\|11...	46.0	[0..19]	[73..27]
dss-1 - status:Confirmed UniProt:Q95Y72 protein_id:AAK29724.3	46.0	[0..35]	[72..35]
gi\|67521572, gi\|... - gi\|67521572\|ref\|XP_658849.1\| hypothetical protein AN1245.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	45.0	[0..6]	[69..7]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPDKEKEK EKEETNNKSE DLGLLEEDDE FEEFPAEDFR VGDDEEELNV WEDNWDDDNV  60
   61 EDDFSQQLKA HLESKKMET

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.69897
Match:	1iyjA
Description:	STRUCTURE OF A BRCA2-DSS1 COMPLEX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits