YRC Public Data Repository - Protein Structure Prediction

Protein:	CG3476-PA
Organism:	Drosophila melanogaster
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG3476-PA.

Description	E-value	Query Range	Subject Range
gi\|74006830 - gi\|74006830\|ref\|XP_537947.2\| PREDICTED: similar to ADP/ATP translocase 3 (Adenine nucleotide translo...	279.0	[0..8]	[297..174]
gi\|46249805 - gi\|46249805\|gb\|AAH68561.1\| Solute carrier family 25 (mitochondrial carrier; phosphate carrier), memb...	276.0	[0..3]	[297..183]
gi\|109012617 - gi\|109012617\|ref\|XP_001083681.1\| PREDICTED: similar to solute carrier family 25 member 24 isoform 2 ...	275.0	[0..3]	[297..164]
gi\|114597246 - gi\|114597246\|ref\|XP_517556.2\| PREDICTED: solute carrier family 25 (mitochondrial carrier; adenine nu...	274.0	[0..1]	[296..197]
gi\|33114697 - gi\|33114697\|gb\|AAP94991.1\| uncoupling protein 3 [Dicrostonyx groenlandicus]	273.0	[0..5]	[299..4]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEVEISTEK KSNPVKSFIA GGVGGMCNVL VGHPLDTIKV RLQTMPTPPP GQPPRYKGVI  60
   61 DCAARTFRYE GFRGFYRGIS APLVGVTPIY AVDFAVYAAG KRLFQTDDHI RLTYPQIFAA 120
  121 GALAGVCSAL VTVPTDRIKV LLQTQTVSNG PLLYNGTIDT AAKLYRQGGI RSLFKGTCAC 180
  181 ILRDSPTGFY FVTYEFLQEL ARKKSANGKI STTSTILSGG TAGIVFWTLA VPFDVLKSRL 240
  241 QSAPEGTYKH GIRSVFRNLM ATEGPKALFR GILPILLRAF PSTAAVFFGV ELTNDLLKA

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Detection Method:	PSI-BLAST
Confidence:	71.69897
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits