YRC Public Data Repository - Protein Structure Prediction

Protein:	Pcp-PA
Organism:	Drosophila melanogaster
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Pcp-PA.

Description	E-value	Query Range	Subject Range
gi\|157483 - gi\|157483\|gb\|AAA28564.1\| pupal cuticle protein [Drosophila melanogaster]	171.0	[0..1]	[184..1]
CUPP_DROPS - Pupal cuticle protein OS=Drosophila pseudoobscura pseudoobscura GN=Pcp PE=2 SV=2 gi\|194114916, gi... - gi\|195155749\|ref\|XP_002018763.1\| GL25976 [Drosophila persimilis], gi\|194114916\|gb\|EDW36959.1\| GL2597... CUPP_DROPS - Pupal cuticle protein precursor - Drosophila pseudoobscura (Fruit fly)	165.0	[0..1]	[177..1]
gi\|55239494, gi\|... - gi\|58387062\|ref\|XP_315279.2\| ENSANGP00000022313 [Anopheles gambiae str. PEST], gi\|55239494\|gb\|EAA106...	132.0	[0..1]	[183..29]
gi\|108875723, gi... - gi\|157118418\|ref\|XP_001659105.1\| Pupal cuticle protein, putative [Aedes aegypti], gi\|108875723\|gb\|EA...	125.0	[0..4]	[127..1]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLLVNFIVA LAVLQVQAGS SYIPDSDRNT RTLQNDLQVE RDGKYRYAYE TSNGISASQE  60
   61 GLGGVAVQGG SSYTSPEGEV ISVNYVADEF GYHPVGAHIP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.853872
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.865	N/A	N/A	d.129.1	TATA-box binding protein-like

Predicted Domain #2

Region A:
Residues: [101-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVPDYILRSL EYIRTHPYQI KDYYTGELKT VEHDAAAFNV YTRNIQDHTI PQSRPSTTPK  60
   61 TIYLTHPPTT TSRPLRQRRA LPTH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits