YRC Public Data Repository - Protein Structure Prediction

Protein:	Gas41-PA
Organism:	Drosophila melanogaster
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Gas41-PA.

Description	E-value	Query Range	Subject Range
gi\|125984025, gi... - gi\|54644094\|gb\|EAL32836.1\| GA21613-PA [Drosophila pseudoobscura], gi\|125984025\|ref\|XP_001355777.1\| G...	291.0	[0..1]	[226..1]
gi\|118790591, gi... - gi\|118790591\|ref\|XP_318687.3\| ENSANGP00000022234 [Anopheles gambiae str. PEST], gi\|116118019\|gb\|EAA1...	290.0	[0..1]	[227..2]
gi\|157132764, gi... - gi\|157132764\|ref\|XP_001662633.1\| YEATS domain containing protein 4 [Aedes aegypti], gi\|108871078\|gb\|...	287.0	[0..2]	[226..5]
gi\|9755857 - gi\|9755857\|emb\|CAC01935.1\| NuBI-1 protein [Homo sapiens]	268.0	[0..1]	[224..1]
ENSOCUP000000099... - pep:novel chromosome:oryCun2:4:48350422:48426536:1 gene:ENSOCUG00000011552 transcript:ENSOCUT0000001... YETS4_MOUSE - YEATS domain-containing protein 4 OS=Mus musculus GN=Yeats4 PE=2 SV=1	265.0	[0..1]	[224..5]
gi\|76682080 - gi\|76682080\|ref\|XP_872200.1\| PREDICTED: similar to YEATS domain containing 4 [Bos taurus] gi\|73968736 - gi\|73968736\|ref\|XP_531673.2\| PREDICTED: similar to YEATS domain containing 4 [Canis familiaris]	265.0	[0..1]	[224..1]
gi\|115496730, gi... - gi\|81674278\|gb\|AAI09627.1\| YEATS domain containing 4 [Bos taurus], gi\|115496730\|ref\|NP_001069833.1\| ... gi\|238814999, gi... - gi\|251823926\|ref\|NP_001156531.1\| YEATS domain containing 4 [Ovis aries], gi\|238814999\|gb\|ACR56696.1\|...	264.0	[0..1]	[224..5]
gi\|34864887, gi\|... - gi\|34864887\|ref\|XP_216890.2\| PREDICTED: similar to YEATS domain containing 4 [Rattus norvegicus], gi...	263.0	[0..1]	[224..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDFGGDSGG RLKGVTIVKP IVYGNIARSF GKKREEDGHT HQWKVYLKPY FNEDMSIYVK  60
   61 KVHFKLHESY ANPNRIVVKP PYEITETGWG EFEVIIKIYF NDQSERPVTC YHILKLFQSP 120
  121 VVDGELSSST TMDTK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.744727
Match:	PF03366.7
Description:	No description for PF03366.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [136-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGLVSESYEE IVFQEPTQIL QHYLLLSEQS ANGLLTHDTD FEEKKTKTLD NIVNVKQKVK  60
   61 GEIVTLKDKL KLARETISKF KAELAKVQKQ PA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.221849
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits