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View Structure Prediction Details

Protein: gi|116310919
Organism: Oryza sativa Indica Group
Length: 384 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|116310919.

Description E-value Query
Range
Subject
Range
GRF3_ORYSJ - Growth-regulating factor 3 OS=Oryza sativa subsp. japonica GN=GRF3 PE=3 SV=2
gi|218195498 - gi|218195498|gb|EEC77925.1| hypothetical protein OsI_17259 [Oryza sativa Indica Group]
458.0 [0..1] [383..1]

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Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMPFASLSP AADHRPSFIF PFCRSSPLSA VGEEAQQHMM GARWAAAVAR PPPFTAAQYE  60
   61 ELEQQALIYK YLVAGVPVPA DLLLPIRRGL DSLASRFYHH PVLGYGSYFG KKLDPEPGRC 120
  121 RRTDGKKWRC SKEAAPDSKY CERHMHRGRN RSRKPVEAQL VAPHSQPPAT APAAAVTSTA 180
  181 FQNHS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [186-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYPAIANGGG ANGGGGGGGG GGSAPGSFAL GSNTQLHMDN AASYSTVAAG AGNKDFRYSA  60
   61 YGVRPLADEH SPLITGAMDT SIDNSWCLLP SQTSTFSVSS YPMLGNLSEL DQNTICSLPK 120
  121 VEREPLSFFG SDYVTVDSGK QENQTLRPFF DEWPKARDSW PDLADDNSLA TFSATQLSIS 180
  181 IPMATSDFST TSSRSHNDE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle