YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0311564, Vm2...
Organism:	Drosophila melanogaster
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0311564, Vm2....

Description	E-value	Query Range	Subject Range
gi\|54657094 - gi\|54657094\|gb\|EAL35927.1\| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu... gi\|67597591 - gi\|67597591\|ref\|XP_666157.1\| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...	180.0	[0..2]	[164..1672]
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	168.0	[0..2]	[162..1503]
gi\|4092885, gi\|7... - pir\|\|T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi\|4092885\|...	161.0	[0..5]	[130..1415]
gi\|40746483, gi\|... - gi\|67517057\|ref\|XP_658413.1\| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	152.0	[0..2]	[167..1565]
gi\|83767526, gi\|... - gi\|9955855\|dbj\|BAB12227.1\| RNA polymerase II largest subunit [Aspergillus oryzae], gi\|83767526\|dbj\|B... gi\|169770395 - gi\|169770395\|ref\|XP_001819667.1\| hypothetical protein [Aspergillus oryzae RIB40]	149.0	[0..15]	[167..1596]
gi\|16271972 - gi\|16271972\|gb\|AAA86616.2\| envelope glycoprotein precursor [Crimean-Congo hemorrhagic fever virus]	148.0	[0..7]	[168..77]
gi\|111060144 - gi\|111060144\|gb\|EAT81264.1\| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]	146.0	[0..2]	[164..1065]
gi\|73955449 - gi\|73955449\|ref\|XP_858007.1\| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...	145.0	[0..19]	[151..1706]
gi\|4808166 - gi\|4808166\|emb\|CAB42797.1\| largest subunit of the RNA polymerase II complex [Drosophila pseudoobscur...	145.0	[0..19]	[166..1630]

Back

Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNFGHLLI AGLVALSAVS SETIQLQPTQ GILIPAPLAE NIRVSRAAYG GYGAAPAAPS  60
   61 YSAPAAPAAQ AYSAPAAPAY SAPAAPAYSA PAAPAYSAPA APAYSAPAAP AYSAPASIPS 120
  121 PPCPKNYLFS CQPSLQPVPC SAPAQSYGSA GAYSQYVPQY AVPFVREL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.23
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits